Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76920 279 / 5e-94 F-box family protein (.1) AT5G15710 43 / 9e-05 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018896 [exp] 397 / 2e-140 AT1G76920 431 / 2e-151 F-box family protein (.1) Lus10035147 [exp] 41 / 0.0005 AT5G15710 721 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10031955 [exp] 40 / 0.0008 AT5G15710 719 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G069900 [exp] 292 / 2e-99 AT1G76920 496 / 1e-176 F-box family protein (.1) Potri.005G190400 [exp] 280 / 1e-94 AT1G76920 531 / 0.0 F-box family protein (.1) Potri.004G112400 [exp] 42 / 0.0001 AT5G15710 753 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF07646 [flax] [poplar] Kelch_2 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10028591 pacid=23164550 polypeptide=Lus10028591 locus=Lus10028591.g ID=Lus10028591.BGIv1.0 annot-version=v1.0 ATGGAGCCCGCCGCCGCTCTCTACTCCCCTAACTCAACCTCCTGGGTAACCTTCGCTTCCAATCTCCCTTCCAAACCCCGTTCCCCTGTTTTCATCAAAG ATTCGCTTTTTGCCCTTTGCGACGTCGGATCCCCCTGGCGATCCCACTGGAAACTCTTCACCTGTCCGCTCAGTGATCATAACAGTTGGGTTTGTTTGGA GAAGAATGAGTGGGCGGACATATTCGATCTGATTAAGCGGCCGAGGTTGGTGAGGGGAAAGGGGAGGAACAAGCTGTTGATGATCGGGGGATTGAAGTCG ACGTTCTCGTTGAACACCTCGTGTTCGACAATGCTGATACTGCGGCTGGATTTGGAGAAGCTGGAGTGGGAGGAGGCTGGGAGGATGCCTGTGGAGATGT ACAGGTGTTTTGTGGAGTCGAGTAAGCTGAAGGTGTTCGGGGATGGTGATAAAGTTTGCTTCTCGGCGAAACGAGTTGGGAAGCTGGCGTTGTGGGATGG TGAGGAGGATGAAGGTAATGGTGGCGAGGTTTGGAGGTGGATTGATGGTGTTCCCGGTACTGGTGATGGGATTTGCAGAGGGTTTATCTATGACGCCACG CTCACTGCTTCAGCTTGA
AA sequence Show only first row Show all	>Lus10028591 pacid=23164550 polypeptide=Lus10028591 locus=Lus10028591.g ID=Lus10028591.BGIv1.0 annot-version=v1.0 MEPAAALYSPNSTSWVTFASNLPSKPRSPVFIKDSLFALCDVGSPWRSHWKLFTCPLSDHNSWVCLEKNEWADIFDLIKRPRLVRGKGRNKLLMIGGLKS TFSLNTSCSTMLILRLDLEKLEWEEAGRMPVEMYRCFVESSKLKVFGDGDKVCFSAKRVGKLALWDGEEDEGNGGEVWRWIDGVPGTGDGICRGFIYDAT LTASA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76920			F-box family protein (.1)		Lus10028591 [exp]	0	1
AT3G22530			unknown protein		Lus10010549 [exp]	3.0	0.8608
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10004712 [exp]	3.5	0.8686
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10004109 [exp]	3.9	0.8748
AT2G43090			Aconitase/3-isopropylmalate de...		Lus10007488 [exp]	8.4	0.8410
AT5G47120		ATBI-1, ATBI1	ARABIDOPSIS BAX INHIBITOR 1, B...		Lus10011006 [exp]	8.9	0.8472
AT1G17100			SOUL heme-binding family prote...		Lus10042093 [exp]	10.6	0.8299
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Lus10036727 [exp]	11.2	0.8139
					Lus10032951 [exp]	14.8	0.8240
AT1G76920			F-box family protein (.1)		Lus10018896 [exp]	15.2	0.8266
AT4G12710			ARM repeat superfamily protein...		Lus10041090 [exp]	16.2	0.8207

Compare expression of checked genes

Lus10028591 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.