Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43710 789 / 0 EMB1075 embryo defective 1075, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G65960 54 / 8e-08 GAD2 glutamate decarboxylase 2 (.1.2) AT2G02010 51 / 1e-06 GAD4 glutamate decarboxylase 4 (.1) AT5G17330 48 / 1e-05 GAD1, GAD GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018897 [exp] 983 / 0 AT5G16860 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041434 [exp] 51 / 7e-08 ND / Lus10022466 [exp] 52 / 7e-07 AT5G15940 400 / 1e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10028530 [exp] 47 / 2e-05 AT5G17330 855 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G190500 [exp] 843 / 0 AT1G43710 811 / 0.0 embryo defective 1075, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G069800 [exp] 821 / 0 AT1G43710 790 / 0.0 embryo defective 1075, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.012G039000 [exp] 58 / 7e-09 AT3G17760 816 / 0.0 glutamate decarboxylase 5 (.1.2) Potri.017G144421 [exp] 53 / 3e-07 AT5G17330 880 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Potri.004G075300 [exp] 53 / 4e-07 AT5G17330 870 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Potri.004G075200 [exp] 51 / 1e-06 AT5G17330 904 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Potri.002G255600 [exp] 48 / 1e-05 AT2G20340 753 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00282 [flax] [poplar] Pyridoxal_deC Pyridoxal-dependent decarboxylase conserved domain
Representative CDS sequence Show only first row Show all	>Lus10028592 pacid=23164615 polypeptide=Lus10028592 locus=Lus10028592.g ID=Lus10028592.BGIv1.0 annot-version=v1.0 ATGGAAGTTCATCAGGCAGTTTCCCCGCCAGCTGCTGCTCCTCACGCTAACGGGATGAAGGAGGACGTGTTCGATCCGGTAGCCATTCTCCGAGCTGACT CGCTACCTCCGGTGGCGTCGGAGAACGGACAGAATGGATTCGGCGGCCAGAAGGAGATTGTGCTTGGGAGGAATGTGCACACGGCATGCTTGGAGGTCAC CGAGCCTGAAGCGAACGACGCATTCACTGGTGATAAGGACGCACATATGGCCGGCGTGTTGGCTCGGTACAGGAATAACCTGCTCGAGCGCACTAAGCAT CATCTAGGTTATCCGTACAACTTGGACTTTGATTACGGTGCTCTGTCCCAGTTGCAGCATTTCTCGATCAACAACCTTGGGGATCCGTTCATCGAGAGCA ACTATGGTGTCCATTCGCGACAGTTTGAAGTTGGAGTGTTGGATTGGTTTGCTCGGTTATGGGAGATTGAGAGGGATGAATACTGGGGATACATAACCAA CTGTGGTACTGAGGGTAACCTCCACGGGATTCTAGTAGGGAGGGAAGTGTTTCCTGATGGCGTTCTTTACGCCTCAAGGGAATCGCATTACTCTGTCTTC AAGGCTGCTCGTATGTATCGAATGGACTGTGTCAAGGTCGACTGTTTGATGTCTGGTGAAATTGATTGTTCGGATTTGAAAGCTCAACTGCTTGCTAACA AAGACAAGCCAGCCATCCTCAATGTGAACATAGGAACTACTGTGAAAGGAGCAGTTGACGACCTCGACCTTGTTATCAAGACCCTTGAAGAGAACGGATT TCCACAAGATCGATTCTACATTCACTGTGATGGAGCTTTGTTCGGACTCATGATGCCTTTCGTCAAACGGGCACCAAAGGTCAGCTTCAAGAAACCAATA GGAAGCGTAAGCGTCTCGGGCCACAAATTCGTCGGATGCCCAATGCCATGCGGCGTCCAGATCACACGCATGGACCACATCAAGGTCCTATCACGAAACG TCGAGTACCTAGCATCCAGAGACGCCACGATCATGGGGAGCCGCAACGGCCACGCCCCAATCTTCCTGTGGTACACGCTCAACAAGAAGGGGTACAAAGG TTTCCAGAAGGAAGTCCAGAAGTGCCTCCGGAACGCACACTACCTCAAGGACAAGCTTCGCGAGGCCGGAATCGGAGCGATGCTGAACGAGCTTAGCAGC ACTGTGGTGTTTGAGCGCCCTCATGACGAGGAGTTCGTGCGCAGGTGGCAGCTCGCCTGCCAGGGGAACATTGCTCACGTTGTGGTCATGCCTAATGTGA CGATTGATAAGCTGGACGATTTCTTGAACGAGCTCATCGAGAAGAGATCGACGTGGTATGAGGATGGGAAGGCTGAGCAGCCTTGTGTTGCTGAGGATAT AGGGAAGGAGAACTGTGCTTGTGCTTTGCACAAGTGA
AA sequence Show only first row Show all	>Lus10028592 pacid=23164615 polypeptide=Lus10028592 locus=Lus10028592.g ID=Lus10028592.BGIv1.0 annot-version=v1.0 MEVHQAVSPPAAAPHANGMKEDVFDPVAILRADSLPPVASENGQNGFGGQKEIVLGRNVHTACLEVTEPEANDAFTGDKDAHMAGVLARYRNNLLERTKH HLGYPYNLDFDYGALSQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEIERDEYWGYITNCGTEGNLHGILVGREVFPDGVLYASRESHYSVF KAARMYRMDCVKVDCLMSGEIDCSDLKAQLLANKDKPAILNVNIGTTVKGAVDDLDLVIKTLEENGFPQDRFYIHCDGALFGLMMPFVKRAPKVSFKKPI GSVSVSGHKFVGCPMPCGVQITRMDHIKVLSRNVEYLASRDATIMGSRNGHAPIFLWYTLNKKGYKGFQKEVQKCLRNAHYLKDKLREAGIGAMLNELSS TVVFERPHDEEFVRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIEKRSTWYEDGKAEQPCVAEDIGKENCACALHK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G43710		EMB1075	embryo defective 1075, Pyridox...		Lus10028592 [exp]	0	1
AT4G28360			Ribosomal protein L22p/L17e fa...		Lus10006865 [exp]	1.4	0.9659
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10020720 [exp]	1.7	0.9571
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Lus10003134 [exp]	2.4	0.9639
AT1G27340			Galactose oxidase/kelch repeat...		Lus10037030 [exp]	4.7	0.9408
AT3G21820		SDG36, ATXR2	SET DOMAIN PROTEIN 36, histone...		Lus10015102 [exp]	4.9	0.9426
AT1G49600		ATRBP47A	RNA-binding protein 47A (.1)		Lus10027911 [exp]	5.3	0.9436
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10000672 [exp]	6.6	0.9549
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10010067 [exp]	7.7	0.9453
AT2G47510		FUM1	fumarase 1 (.1.2)		Lus10028532 [exp]	8.7	0.9276
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10038538 [exp]	8.9	0.9487

Compare expression of checked genes

Lus10028592 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.