Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16860 879 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 515 / 1e-172 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 507 / 4e-170 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G20230 499 / 2e-167 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G23330 494 / 2e-166 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G25360 492 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 489 / 5e-164 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 488 / 8e-163 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G02750 487 / 9e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 480 / 7e-159 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018897 [exp] 1359 / 0 AT5G16860 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 518 / 3e-174 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030581 [exp] 516 / 2e-168 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10014707 [exp] 506 / 4e-168 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016425 [exp] 499 / 3e-167 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030908 [exp] 511 / 2e-166 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10004081 [exp] 502 / 2e-166 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 478 / 8e-160 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 480 / 1e-158 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G041200 [exp] 993 / 0 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 519 / 7e-174 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G027800 [exp] 512 / 3e-172 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 506 / 1e-170 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G136200 [exp] 505 / 2e-170 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.003G191000 [exp] 500 / 1e-167 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G085500 [exp] 496 / 4e-166 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.001G466066 [exp] 496 / 1e-165 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G091600 [exp] 489 / 1e-164 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 490 / 1e-163 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10028593 pacid=23164560 polypeptide=Lus10028593 locus=Lus10028593.g ID=Lus10028593.BGIv1.0 annot-version=v1.0 ATGGATTGTGCACGGCAGGTGTTCGACGAAATGTGTGAACGAGAGGTGGTTGACTTGGTATCATGGAATTCCATCGCCGCGGCTTATATCCAAAATTCGG ATATGAAAGGTGCGGTTTCAATGTTTCGTAGGATGATGAGGACGAGTGGTGCTGATGATTCCGGGATTCGAGCTGATGCTGTAAGCATTGTGAATGTTTT GCCAGCTTGTGCTTCTCTTCAGCTATGGTTGAAGGGTAAAGAAGTGCATTGCTTTGCTATCCGAAGTGGACTATTTCACGACGTTTTCGTTGGTAATTCG TTGGTCGATCTCTACGCAAAAGGCGGGCTAATGAACGAGGCGAGCAAGGTTTTCGATCTTATGTTGGAGAAAGATGTGGTCTCTTGGAATGCTATGGTAA CCGGTTACACACAGAGTGGCCAATTCGAATCTGCTCTTGCCTTGTTCGAGAACATGAAGGAAGATGAAATCGAGCTGGATGTTATCTCATGGAGTGCTGT AATCGCTGGCTATGCACAGAGAGGGCTTGGAATCGAAGCATTGGATACGTTCAGGCAAATGATTGTTTACGGTTCGATGCCGAATGAGGTTACGCTGTTA TCAGTACTTTCAGGGTGCGCTTCCGTTGGAGCATTGCTTCAAGGTAAAGAGACTCATTGCTACGCAATAAAATGCATCTTGCGTGGAAGTTACAGCGATC CCGGTTTCGAAGTCTCTGTGATCAACTCTCTCGTCGACATGTACGCGAAATGCAAGAGTTTAGATTTGGCTCGTGCTTTGTTCCAGTTGCTTGCACCGCA AGAAAGAGACGTCGTGACTTGGACCACGTTGATTGGTGGTTACGCACAGCACGGAGATGCCAATGATGCGTTGGAATTGTTCAAAAGGATGATCAAAGAG AATATCTTTATCAAGCCTAACGCATTCACAATCTCCTGTGCACTAATGGCGTGCGCCCGTGCAAATTCCTTAAGCTTCGGTAAGCAGATTCACGGTTATA TAATTCGTAAACGTTATGATGTTATTAACGTGTTGTATGTCCCCAACTGCCTGATCGACATGTACTCGAAATCGGGGGATATCGAAATTGCTAGAATTGT GTTTGACAGCATGAAGCATAGAAATGCTGTTTCGTTCACAACGCTTATAACTGGTTACGGTATGCATGGGCGAGGCGAGGAAGCTTTATCGGTTTTCGAG GAAATGAAGAGATCCGGTTACCTTCTTGACAGCGTGACATTCCTTGTAGTTCTCTACGCTTGCAGCCATTCCGGAATGGTGGATAAAGGGATGGAATGTT TCAATTCCATGAGCGAAGAGTATGGGATTCAGCCCGGGGAAGAGCATTACGCTTGTATGGTTGATTTATTAGGCCGAGCTGGCCGGTTCGATCAGGCAAT GAAGCTCGTCGAAACAATGCCTTTCCCACCAAGCTCAATAGTCTGGGTAGCTCTACTCAGCGGCTGCAGGAAGCATGGTAACATCGAATTAGCAGAGTTC GCCACGAAGAAGCTGACAGAGTCTAAATCAGATAATGACGGGTCCTACACCCTTCTATCAAACATCTACGCCGATGCTAGACGATGGAAAGATGTGGCGA GTGTTAGAACTCTAATGAAGCGTAGTGGGATAAGGAAGAGGCCAGGGTGTAGTTGGGTGCAAGTGAAGAACGGAAGTGTGACCTTTTTTGCTGGAGATAG AGCTCACCCAATGTGGAAGCAGGTTTACGAGGTTCTGGCTGGGTTGATCGAGCGGATTAAGGTGCTTGGATATGTTCCGGAAACGAGGTTCGCGCTTCAT GACGTGGATGATGAAGAGAAAGGTGATCTTTTGTCTGAACACAGTGAGAAGCTTGCGCTTGCGTATGGGATCCTGACAGGTGTTCCTGGTGCGCCGATTC GAATAACGAAGAACTTGAGGGTGTGTGGTGATTGCCACAGTGCGTTTACTTATGTGTCTATGGTGGTTGAGAATGAGATCGTTTTGAGGGATTCGAGCCG CTTCCATCATTTCAAGAATGGTGCTTGCTCCTGTAAAGGCTACTGGTAA
AA sequence Show only first row Show all	>Lus10028593 pacid=23164560 polypeptide=Lus10028593 locus=Lus10028593.g ID=Lus10028593.BGIv1.0 annot-version=v1.0 MDCARQVFDEMCEREVVDLVSWNSIAAAYIQNSDMKGAVSMFRRMMRTSGADDSGIRADAVSIVNVLPACASLQLWLKGKEVHCFAIRSGLFHDVFVGNS LVDLYAKGGLMNEASKVFDLMLEKDVVSWNAMVTGYTQSGQFESALALFENMKEDEIELDVISWSAVIAGYAQRGLGIEALDTFRQMIVYGSMPNEVTLL SVLSGCASVGALLQGKETHCYAIKCILRGSYSDPGFEVSVINSLVDMYAKCKSLDLARALFQLLAPQERDVVTWTTLIGGYAQHGDANDALELFKRMIKE NIFIKPNAFTISCALMACARANSLSFGKQIHGYIIRKRYDVINVLYVPNCLIDMYSKSGDIEIARIVFDSMKHRNAVSFTTLITGYGMHGRGEEALSVFE EMKRSGYLLDSVTFLVVLYACSHSGMVDKGMECFNSMSEEYGIQPGEEHYACMVDLLGRAGRFDQAMKLVETMPFPPSSIVWVALLSGCRKHGNIELAEF ATKKLTESKSDNDGSYTLLSNIYADARRWKDVASVRTLMKRSGIRKRPGCSWVQVKNGSVTFFAGDRAHPMWKQVYEVLAGLIERIKVLGYVPETRFALH DVDDEEKGDLLSEHSEKLALAYGILTGVPGAPIRITKNLRVCGDCHSAFTYVSMVVENEIVLRDSSRFHHFKNGACSCKGYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16860			Tetratricopeptide repeat (TPR)...		Lus10028593 [exp]	0	1
AT1G03540			Pentatricopeptide repeat (PPR-...		Lus10033713 [exp]	1.0	0.9092
AT5G59100			Subtilisin-like serine endopep...		Lus10042555 [exp]	1.7	0.8555
AT5G08305			Pentatricopeptide repeat (PPR)...		Lus10010183 [exp]	2.4	0.8409
AT2G37320			Tetratricopeptide repeat (TPR)...		Lus10009070 [exp]	3.5	0.8811
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10018492 [exp]	4.5	0.8344
AT2G36730			Pentatricopeptide repeat (PPR)...		Lus10004373 [exp]	4.9	0.8514
AT5G08510			Pentatricopeptide repeat (PPR)...		Lus10005987 [exp]	5.9	0.8390
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10021069 [exp]	7.1	0.8500
AT2G41080			Tetratricopeptide repeat (TPR)...		Lus10003324 [exp]	7.5	0.8357
AT1G62260		MEF9	mitochondrial editing factor 9...		Lus10012514 [exp]	10.4	0.8320

Compare expression of checked genes

Lus10028593 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.