Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45340 294 / 1e-94 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT1G19630 290 / 8e-93 CYP722A1 "cytochrome P450, family 722, subfamily A, polypeptide 1", cytochrome P450, family 722, subfamily A, polypeptide 1 (.1) AT4G19230 286 / 1e-91 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT3G19270 264 / 6e-83 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) AT2G29090 252 / 2e-78 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT5G05690 234 / 2e-71 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT4G36380 227 / 2e-68 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT3G13730 223 / 3e-67 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT2G42850 222 / 8e-67 CYP718 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) AT2G32440 214 / 9e-64 ATKAO2, CYP88A4, KAO2 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018898 [exp] 905 / 0 AT5G45340 301 / 3e-97 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10024272 [exp] 303 / 5e-98 AT1G19630 592 / 0.0 "cytochrome P450, family 722, subfamily A, polypeptide 1", cytochrome P450, family 722, subfamily A, polypeptide 1 (.1) Lus10042652 [exp] 284 / 2e-90 AT3G19270 647 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10021725 [exp] 277 / 3e-88 AT3G19270 633 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10033308 [exp] 266 / 2e-83 AT5G45340 732 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10035685 [exp] 265 / 4e-83 AT4G19230 714 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Lus10034768 [exp] 260 / 3e-81 AT5G45340 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10019858 [exp] 241 / 1e-73 AT3G19270 643 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10016515 [exp] 234 / 4e-71 AT2G29090 554 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G069600 [exp] 754 / 0 AT5G45340 296 / 1e-95 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Potri.002G033000 [exp] 314 / 8e-102 AT1G19630 607 / 0.0 "cytochrome P450, family 722, subfamily A, polypeptide 1", cytochrome P450, family 722, subfamily A, polypeptide 1 (.1) Potri.004G235400 [exp] 285 / 5e-91 AT4G19230 778 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Potri.014G029100 [exp] 278 / 3e-88 AT3G19270 665 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.002G126100 [exp] 268 / 2e-84 AT3G19270 666 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.004G140900 [exp] 266 / 7e-84 AT3G19270 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.009G101700 [exp] 261 / 6e-82 AT3G19270 711 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.009G033900 [exp] 261 / 8e-82 AT2G29090 677 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.001G242600 [exp] 258 / 2e-80 AT2G29090 652 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.012G115000 [exp] 236 / 5e-72 AT5G36110 295 / 7e-95 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10028594 pacid=23164476 polypeptide=Lus10028594 locus=Lus10028594.g ID=Lus10028594.BGIv1.0 annot-version=v1.0 ATGGAGGAGGCAACGAAGATGCTGATAGTTATGATCATCTCCTCTGTTATCGTCTCCGTTTTACTGGTTACAAAGCTGCTGCAGAGGTCTTCGCCAAAGG AGATGGAGGTGATCCCAGGGAGCTTGGGTTGGCCGGTTGTGGGCGAGAGCTTCTCGTTTATTTCGAATTTCGGTAGTCCTTCTGGGATATTCAACTTCAT GAAAGAGAGACAAGAGAGGTATGGCAAGGTGTTCAAGAGCTTTGTGCTAGGAAGATTCACGGTGTTCATGACAGGCAGAGAAGCCAGCAAGATCTTACTC ACGGGCAAAGATGGCATGGTCAGCTTGAACCTTTTCTACACCGGCCAGCAAGTTCTCGGCCCGACCAGCCTCCTCCAGACCACCGGCGACGCTCACAGGA GGCTGCGTCGCCTCATCGCAGAGCCCCTCTCGGTCGAGGGGCTCAAGAAGTACTTCCACTTCATCAACACTCTGGCTGCTCACACCATGGACCAGTGGAG TGGGAGGAGCAAAGTCTTTGTCCTTGAAGAAGCCTCCTTGGTGATTGGGAACATGATAATGAGCTTGGAGCCAACTGGAGAAGAGCAAGAGAAGTTCAGA TCAAACTTCAAGATCATATCTTCAAGCTTTGCTTCCTTGCCCTTCAAGCTTCCTGGCACAGCTTTCTACAACGGTATCAAGGCCAGGGACAGAATGTACG AGATGCTGGACGCGACAATCGCCAGGAGAAGGAGCGGGGAGAGCATTCATCAGGATTTTCTCGAGTCCCTGATAATGAAGCACAGTAAATCTTCAGGAGA CGGGAAATCTGAGGAAGAAGAAGACGACAAGCTGACAGATCAGCAGCTGAAAGATAACATCCTGACACTTTTAGTTGCAGGGCATGACACCACCACAGCT GCCCTGACATGGACCATGAAGTTCCTGGCTGAAAATCCTGACGTTCTGGAAAAGCTCAGGGAGGAGCATAGGTTGATCATGGAGAAGAGAAGTGATGGAG CTGATTTGACTTGGTCTGAAGTGAACAACATGCCTTACACAAACAAGGTGATTAGTGAAACGCTACGGAGAGCCACGATACTACCGTGGTACTCAAGAAA GGCTGCTCAGGACTTCGAAATTGATGGGTACCAAATCAAGAAAGGTTGGTCGGTTAATTTGGACGTTGTATCGATTCATCACGACCCTGAAGTCTTCCCT GATCCAGAAAAGTTCGATCCAACCAGATTCGATGCACCTTTGAGGTCATACAACTACCTAGGGTTTGGGAATGGTCCTAGGATGTGCCCCGGGATCAACC TTGCTAAGCTTGAAATTTGTATCTTCATTCACCACTTGGTCACTCGATACAAGTGGACGGCAGCGGAGAAGGACGACTCAGTCCAACCAACGTTAGTGAG GATGCCTAAAAACAAATACCCAGTTTTCGTTGAACCTCTTTGA
AA sequence Show only first row Show all	>Lus10028594 pacid=23164476 polypeptide=Lus10028594 locus=Lus10028594.g ID=Lus10028594.BGIv1.0 annot-version=v1.0 MEEATKMLIVMIISSVIVSVLLVTKLLQRSSPKEMEVIPGSLGWPVVGESFSFISNFGSPSGIFNFMKERQERYGKVFKSFVLGRFTVFMTGREASKILL TGKDGMVSLNLFYTGQQVLGPTSLLQTTGDAHRRLRRLIAEPLSVEGLKKYFHFINTLAAHTMDQWSGRSKVFVLEEASLVIGNMIMSLEPTGEEQEKFR SNFKIISSSFASLPFKLPGTAFYNGIKARDRMYEMLDATIARRRSGESIHQDFLESLIMKHSKSSGDGKSEEEEDDKLTDQQLKDNILTLLVAGHDTTTA ALTWTMKFLAENPDVLEKLREEHRLIMEKRSDGADLTWSEVNNMPYTNKVISETLRRATILPWYSRKAAQDFEIDGYQIKKGWSVNLDVVSIHHDPEVFP DPEKFDPTRFDAPLRSYNYLGFGNGPRMCPGINLAKLEICIFIHHLVTRYKWTAAEKDDSVQPTLVRMPKNKYPVFVEPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10028594 [exp]	0	1
AT5G48540			receptor-like protein kinase-r...		Lus10038227 [exp]	1.7	0.9380
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10013067 [exp]	1.7	0.9350
AT3G18715		IDL4	inflorescence deficient in abs...		Lus10020848 [exp]	2.0	0.9373
AT4G20860			FAD-binding Berberine family p...		Lus10038446 [exp]	2.8	0.9311
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10012978 [exp]	4.2	0.9051
					Lus10030114 [exp]	4.5	0.8964
AT1G11770			FAD-binding Berberine family p...		Lus10023366 [exp]	5.0	0.9204
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10001009 [exp]	5.2	0.8973
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Lus10026262 [exp]	8.8	0.8633
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Lus10016413 [exp]	9.9	0.8884

Compare expression of checked genes

Lus10028594 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.