Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43660 270 / 1e-92 Vacuolar iron transporter (VIT) family protein (.1) AT3G43630 260 / 1e-88 Vacuolar iron transporter (VIT) family protein (.1) AT1G21140 254 / 2e-86 Vacuolar iron transporter (VIT) family protein (.1) AT1G76800 235 / 6e-79 Vacuolar iron transporter (VIT) family protein (.1) AT3G25190 196 / 2e-63 Vacuolar iron transporter (VIT) family protein (.1) AT2G01770 41 / 0.0003 ATVIT1, VIT1 vacuolar iron transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031922 [exp] 330 / 3e-116 AT3G43660 286 / 4e-99 Vacuolar iron transporter (VIT) family protein (.1) Lus10035086 [exp] 322 / 6e-113 AT3G43660 284 / 2e-98 Vacuolar iron transporter (VIT) family protein (.1) Lus10042804 [exp] 314 / 1e-109 AT3G43660 276 / 2e-95 Vacuolar iron transporter (VIT) family protein (.1) Lus10029776 [exp] 295 / 3e-102 AT3G43660 273 / 4e-94 Vacuolar iron transporter (VIT) family protein (.1) Lus10031543 [exp] 274 / 5e-94 AT3G43660 268 / 5e-92 Vacuolar iron transporter (VIT) family protein (.1) Lus10025685 [exp] 229 / 5e-76 AT3G43660 241 / 4e-81 Vacuolar iron transporter (VIT) family protein (.1) Lus10018150 [exp] 227 / 3e-75 AT3G43660 244 / 2e-82 Vacuolar iron transporter (VIT) family protein (.1) Lus10015135 [exp] 201 / 9e-66 AT3G43660 200 / 4e-66 Vacuolar iron transporter (VIT) family protein (.1) Lus10021809 [exp] 43 / 9e-05 AT2G01770 413 / 3e-148 vacuolar iron transporter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G069400 [exp] 271 / 7e-93 AT3G43630 238 / 5e-80 Vacuolar iron transporter (VIT) family protein (.1) Potri.005G190800 [exp] 267 / 4e-91 AT1G76800 232 / 6e-78 Vacuolar iron transporter (VIT) family protein (.1) Potri.018G106000 [exp] 239 / 5e-80 AT3G43660 219 / 9e-73 Vacuolar iron transporter (VIT) family protein (.1) Potri.011G146100 [exp] 118 / 4e-32 AT3G43660 97 / 3e-24 Vacuolar iron transporter (VIT) family protein (.1) Potri.001G456000 [exp] 110 / 6e-29 AT3G43660 66 / 1e-12 Vacuolar iron transporter (VIT) family protein (.1) Potri.010G104100 [exp] 42 / 0.0002 AT2G01770 320 / 2e-111 vacuolar iron transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01988 [flax] [poplar] VIT1 VIT family
Representative CDS sequence Show only first row Show all	>Lus10028596 pacid=23164583 polypeptide=Lus10028596 locus=Lus10028596.g ID=Lus10028596.BGIv1.0 annot-version=v1.0 ATGGCTAGCACCAACCAATTTCCCCCATCATCCCTCCACCAATCCAACAAGGTGGAAGAAGAACAAGTCGACCAGTTCGACTATGCGAAGAGGGCTCAGT GGCTCAGAGCTGCGGTGTTGGGAGCCAACGATGGTTTGGTCTCCACTGCGTCTCTTATGATGGGAGTGGGAGCGGTGAGGCAGGACATCAAGGCGATGAT CCTGACAGGGTTCGCGGGTCTCGTGGCGGGGGCTTGTAGTATGGCAATAGGCGAGTTCGTCTCTGTCTACTCCCAGTACGACATAGAGGTCGCTCAGATG AAGCGCGACACTGAAAGGGGTAGTACTACTACTATTACCACTCGTGTTGCCGAGATTGAAGAGATGGAGAAGGAGGAGAAGAAGAAAGAGGAGAGCTTGC CAAGCCCGGTGCAGGCTGCAGCTGCATCGGGCCTGGCATTTTCCGTAGGTGCGATGGTGCCTCTATTGGCCGCCTCGTTCATTAGGGACTACAAGGTGAG GCTCGGAGTGATGATTGGTGCGGTGACCTTGGCTTTGGTTGTGTTTGGTTGGATCGGGGCCGTGTTGGGAAATGCACCTGTGGTTAAGTCTTCTTTGAGG GTTCTGATTGGTGGGTGGATGGCTATGGCTGTCACTTTTGCGTTGACTAAGTCCGTTGACACCAAACATATGGATTTGTTTTGA
AA sequence Show only first row Show all	>Lus10028596 pacid=23164583 polypeptide=Lus10028596 locus=Lus10028596.g ID=Lus10028596.BGIv1.0 annot-version=v1.0 MASTNQFPPSSLHQSNKVEEEQVDQFDYAKRAQWLRAAVLGANDGLVSTASLMMGVGAVRQDIKAMILTGFAGLVAGACSMAIGEFVSVYSQYDIEVAQM KRDTERGSTTTITTRVAEIEEMEKEEKKKEESLPSPVQAAAASGLAFSVGAMVPLLAASFIRDYKVRLGVMIGAVTLALVVFGWIGAVLGNAPVVKSSLR VLIGGWMAMAVTFALTKSVDTKHMDLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G43660			Vacuolar iron transporter (VIT...		Lus10028596 [exp]	0	1
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Lus10003333 [exp]	4.0	0.8761
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Lus10014706 [exp]	5.1	0.8634
AT2G23140			RING/U-box superfamily protein...		Lus10032023 [exp]	8.0	0.8508
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10022373 [exp]	8.0	0.8344
AT1G29950	bHLH		basic helix-loop-helix (bHLH) ...		Lus10004926 [exp]	9.0	0.8612
AT1G71140			MATE efflux family protein (.1...		Lus10041053 [exp]	12.4	0.8146
AT5G25280			serine-rich protein-related (....		Lus10038100 [exp]	14.7	0.8456
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10014820 [exp]	14.7	0.8370
AT3G57120			Protein kinase superfamily pro...		Lus10011517 [exp]	20.1	0.8207
AT5G20480		EFR	EF-TU receptor (.1)		Lus10024681 [exp]	22.8	0.7849

Compare expression of checked genes

Lus10028596 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.