Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32410 1848 / 0 AtCESA1, RSW1, CESA1 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) AT2G25540 1709 / 0 CESA10 cellulose synthase 10 (.1) AT5G05170 1487 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT5G17420 1378 / 0 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT5G64740 1367 / 0 PRC1, IXR2, E112, CESA6 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) AT2G21770 1357 / 0 CESA09, CESA9 cellulose synthase A9 (.1) AT4G18780 1273 / 0 LEW2, IRX1, ATCESA8, CESA8 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) AT4G39350 827 / 0 ATH-A, CESA2, ATCESA2 cellulose synthase A2 (.1) AT5G09870 826 / 0 CESA5 cellulose synthase 5 (.1) AT3G03050 807 / 0 RHD7, ATCSLD3, KJK, CSLD3 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018902 [exp] 2086 / 0 AT4G32410 1915 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10012198 [exp] 1469 / 0 AT5G05170 1774 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10039607 [exp] 1468 / 0 AT5G05170 1820 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10007538 [exp] 1467 / 0 AT5G05170 1772 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10003526 [exp] 1370 / 0 AT5G64740 1863 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10006161 [exp] 1330 / 0 AT5G64740 1734 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10007296 [exp] 1241 / 0 AT4G18780 1671 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Lus10029245 [exp] 1228 / 0 AT4G18780 1659 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Lus10041063 [exp] 848 / 0 AT5G64740 1868 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G251900 [exp] 1943 / 0 AT4G32410 1899 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.018G029400 [exp] 1942 / 0 AT4G32410 1898 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.001G266400 [exp] 1508 / 0 AT5G05170 1838 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.009G060800 [exp] 1507 / 0 AT5G05170 1838 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.016G054900 [exp] 1464 / 0 AT5G05170 1754 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.006G052600 [exp] 1461 / 0 AT5G05170 1749 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.013G019800 [exp] 1452 / 0 AT5G64740 1512 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.005G027600 [exp] 1438 / 0 AT5G64740 1506 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.006G181900 [exp] 1403 / 0 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.018G103900 [exp] 1400 / 0 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03552 [flax] [poplar] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Lus10028597 pacid=23164506 polypeptide=Lus10028597 locus=Lus10028597.g ID=Lus10028597.BGIv1.0 annot-version=v1.0 ATGGAAGCGAATGCCGGCATGGTTGCCGGCTCCTACCGCCGGAACGAGCTCGTCCGGATTCGCCACGATTCCGACGGCGGGCCGAAACCACTGAAGAACT TGAGTGGCCAAACGTGCCAGATCTGTGGTGATAGTGTTGGACTTACTGCCAATGGGGATGTATTCGTTGCTTGCAATGAATGTGCCTTCCCGGTTTGTCA TCCTTGTTACGAGTACGAGCGAAAAGATGGGACCCAGGCTTGCCCCCAGTGCAAGACTCGGTACAAGAGGCACAAAGGGTGCCCTCGGGTTGATGGAGAT GAGGATGAAGACGATGTTGATGATCTTGAAGACGAGTTCAGCTATCAAGCCACTGGGAAAGCTGGCCGACACTGGCAGGGTGATGATGTAGAGCTCTCTT CCTCGTCGAGGCATGAATCTCAGATGCCGATTCCTCTTCTGACTAATGGCCAGCAGATTTCGGGTGAAATTCCATGCGCTACACCGGATACACAGTCTGT TCGGACTACATCAGGCCCCTTAGGCCCTACTGACAAGAATGTACAGTCGTCTCCTTATCTCGATCCAAGGCAACCAGTTCCTGTTAGAATTGTGGATCCA TCAAAGGACTTGAATTCCTATGGTCTTGGTAATGTGGACTGGAAGGAAAGAGTGGAGGGTTGGAAAATGAAGCAGGAGAAGGGAATGATGCATATGAGTA ACCGACATAGTGAAGGAAAAGGAGACATTGAAGGCACAGGTTCAAATGGAGAAGAGCTTCAAATGGCTGACGATGCTCGGCAACCTATGAGCCGGGTGGT CCCTATCCCATCTTCTCACATGACCCCATATCGCGTAGTCATCATTCTGCGATTCATCATCTTGTGTTTCTTCTTGCAATATCGTGTGACACACCCGGTG AAGGATGCATACCCATTGTGGCTTATTTCCATCATTTGCGAGATCTGGTTTGCTTTGTCTTGGCTTCTGGATCAGTTCCCCAAATGGCAACCCATCAATC GCGAGACTTATCTGGACAGGCTTGCACTGAGATTTGATCGTGAAGGGGAGCCATCGCAGCTAGCTCCTGTTGATGTGTTTGTCAGTACCGTGGATCCTAT GAAAGAGCCTCCTCTAATCACTGCGAACACTGTCTTGTCCATACTTGCTGTGGATTACCCGGTTGACAAAGTATCATGCTATGTATCTGATGATGGATCA GCAATGTTGTCATTTGAATCCCTCTCGGAGACTGCTGAATTCGCTAGGAAGTGGGTGCCTTTCTGCAAGAAGCACAATATAGAGCCTAGAGCTCCTGAGT TCTACTTCGCCCAGAAGATAGATTACTTGAAGGACAAGATACAGCCTTCCTTTGTGAAAGAGAGACGAGCTATGAAGAGAGAATATGAAGAGTTCAAGGT GCGGATCAATGCCCTTGTTGCTAAAGCACAAAAGATGCCTGAAGAAGGGTGGACAATGCAAGATGGCACTCCCTGGCCCGGGAATAATTCCAGGGACCAT CCCGGAATGATTCAGGTCTTCCTAGGCCACAGTGGAGGACTCGATACCGATGGAAATGAACTGCCTCGGCTTGTGTACGTTTCTCGTGAAAAGAGACCGG GATTCCAACATCACAAGAAAGCTGGAGCCATGAATGCATTGATTCGAGTTTCGGCTGTTTTGACCAATGGTGCCTATCTGCTGAATGTGGATTGTGATCA TTACTTCAATAACAGCAAAGCTCTTAAAGAGGCAATGTGCTTCATGATGGATCCTGCATACGGAAAGAAGACATGCTATGTGCAGTTCCCACAACGTTTC GATGGCATTGACTTGCACGATCGATATGCTAATCGCAATATTGTCTTCTTCGATATCAATTTGAAGGGGCTGGATGGTATTCAGGGACCGGTGTACGTCG GTACTGGTTGTTGTTTCAACAGACAAGCATTATATGGTTACGACCCCGTTCTTACTGAAGAGGATCTAGAACCAAACATCGTTGTCAAGAGTTGTTGCGG AACGAGAAAGAAGAGCAAGAGTGGGAGCAAAAAGTACTCTGACAAAAGAAAGAACATGAAGAGAACTGAATCATCAGTCCCGATGTTCAATCCAGAAGAC ATTGAGGATGGTATCGAAGGATATGATGATGAGAGGTCACTCTTAATGTCTCAGAGAAGTCTCGAGAAGCGATTCGGTCAGTCACCAGTCTTTATCGCTG CTACTTTCATGGAGATGGGAGGCATTCCACCGTCCACGAATCCCGCGACCCTTCTAAAGGAAGCTATCCATGTCATCAGCTGCGGGTATGAAGACAAGAC TGAATGGGGCAAAGAGATCGGGTGGATCTACGGTTCGGTTACGGAAGATATTTTGACCGGTTTCAAGATGCATGCACGTGGTTGGATTTCAGTTTACTGC ATGCCTCCACGCCCAGCGTTCAAGGGTTCTGCTCCAATCAATCTTTCTGATCGTTTGAACCAAGTTCTTCGGTGGGCCCTTGGATCGATTGAGATTTTGT TGAGCAGGCATTGCCCTATATGGTATGGCTACAATGGGAAGTTAAAGCTCTTGGAGAGGCTCGCTTACATTAACACGATCGTCTATCCCATCACCTCTCT TCCGCTGCTCGCCTACTGTATGCTTCCCGCGTTCTGTCTTCTCACGAACAAATTCATCATTCCCGAGATAAGCAACTTTGCCAGTATGTGGTTCATTCTC CTTTTCGCATCCATTATCGTGACCGGAATCCTCGAGCTGAGGTGGAGCGGAGTCAGTCTGGAGGACTGGTGGAGGAACGAACAGTTCTGGGTCATTGGTG GCACTTCGGCTCATCTCTTTGCTGTGTTCCAAGGTCTACTCAAGGTCCTCGCCGGAATCGACACCAACTTTACCGTCACTTCAAAGGCATCAGACGAGGA TGGCGATTTCGCTGAGCTCTACCTCTTCAAATGGACCTCCTTGCTCATCCCTCCGACCACCGTCCTTATCGTGAACTTGGTAGGCATCGTGGCTGGAGTT TCTTATGCCATAAACAGCGGATATCAGTCTTGGGGACCACTCTTTGGAAAGCTCTTCTTCGCCTTGTGGGTCGTCGCCCATTTGTATCCTTTCTTGAAAG GTCTTTTGGGTCGCCAGAATCGTACACCTACCATTGTCATCGTCTGGTCGATTCTCCTCGCCTCGATATTCTCGTTACTGTGGGTGCGTATCGATCCTTT CACTACCAACTCCACGAAGACTGTGTCGAATGGTCAGTGA
AA sequence Show only first row Show all	>Lus10028597 pacid=23164506 polypeptide=Lus10028597 locus=Lus10028597.g ID=Lus10028597.BGIv1.0 annot-version=v1.0 MEANAGMVAGSYRRNELVRIRHDSDGGPKPLKNLSGQTCQICGDSVGLTANGDVFVACNECAFPVCHPCYEYERKDGTQACPQCKTRYKRHKGCPRVDGD EDEDDVDDLEDEFSYQATGKAGRHWQGDDVELSSSSRHESQMPIPLLTNGQQISGEIPCATPDTQSVRTTSGPLGPTDKNVQSSPYLDPRQPVPVRIVDP SKDLNSYGLGNVDWKERVEGWKMKQEKGMMHMSNRHSEGKGDIEGTGSNGEELQMADDARQPMSRVVPIPSSHMTPYRVVIILRFIILCFFLQYRVTHPV KDAYPLWLISIICEIWFALSWLLDQFPKWQPINRETYLDRLALRFDREGEPSQLAPVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVSCYVSDDGS AMLSFESLSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNSRDH PGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRF DGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIVVKSCCGTRKKSKSGSKKYSDKRKNMKRTESSVPMFNPED IEDGIEGYDDERSLLMSQRSLEKRFGQSPVFIAATFMEMGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISVYC MPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGKLKLLERLAYINTIVYPITSLPLLAYCMLPAFCLLTNKFIIPEISNFASMWFIL LFASIIVTGILELRWSGVSLEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYLFKWTSLLIPPTTVLIVNLVGIVAGV SYAINSGYQSWGPLFGKLFFALWVVAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFTTNSTKTVSNGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32410		AtCESA1, RSW1, ...	RADIALLY SWOLLEN 1, cellulose ...		Lus10028597 [exp]	0	1
AT4G32410		AtCESA1, RSW1, ...	RADIALLY SWOLLEN 1, cellulose ...		Lus10018902 [exp]	1.0	0.9487
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Lus10007538 [exp]	1.4	0.9411
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10002940 [exp]	2.4	0.9363
AT3G14300		ATPMEPCRC, ATPM...	A. THALIANA PECTIN METHYLESTER...		Lus10003934 [exp]	2.8	0.8915
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10003526 [exp]	3.2	0.9315
AT2G21390			Coatomer, alpha subunit (.1)		Lus10025780 [exp]	4.9	0.9320
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Lus10028796 [exp]	6.3	0.8837
AT5G51430		EYE	EMBRYO YELLOW, conserved oligo...		Lus10031155 [exp]	9.4	0.8836
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10001368 [exp]	9.5	0.9025
AT5G47780		GAUT4	galacturonosyltransferase 4 (....		Lus10038739 [exp]	13.5	0.8346

Compare expression of checked genes

Lus10028597 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.