Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76940 122 / 2e-33 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G21320 121 / 4e-32 nucleotide binding;nucleic acid binding (.1.2) AT2G47580 45 / 2e-05 U1A spliceosomal protein U1A (.1) AT2G30260 44 / 9e-05 U2B'' U2 small nuclear ribonucleoprotein B (.1) AT2G42240 43 / 0.0002 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT3G13700 42 / 0.0003 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018903 [exp] 305 / 9e-100 AT1G21320 182 / 5e-54 nucleotide binding;nucleic acid binding (.1.2) Lus10028599 [exp] 247 / 1e-80 AT1G21320 206 / 4e-66 nucleotide binding;nucleic acid binding (.1.2) Lus10042240 [exp] 46 / 2e-05 AT2G30260 352 / 2e-124 U2 small nuclear ribonucleoprotein B (.1) Lus10026413 [exp] 46 / 2e-05 AT2G30260 350 / 1e-123 U2 small nuclear ribonucleoprotein B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G070200 [exp] 150 / 2e-43 AT1G76940 215 / 4e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.012G019300 [exp] 130 / 6e-36 AT1G76940 167 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.015G009000 [exp] 130 / 7e-36 AT1G76940 170 / 8e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G224900 [exp] 100 / 4e-24 AT1G21320 122 / 2e-33 nucleotide binding;nucleic acid binding (.1.2) Potri.007G046600 [exp] 52 / 2e-07 AT2G42240 334 / 4e-115 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.002G203600 [exp] 45 / 5e-05 AT2G47580 349 / 1e-122 spliceosomal protein U1A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10028598 pacid=23164622 polypeptide=Lus10028598 locus=Lus10028598.g ID=Lus10028598.BGIv1.0 annot-version=v1.0 ATGGCCGATTACTGGAACCGCCAGCAGCAGCAACAACAGCAGCCACCTCCTCTTCTGCCCGCCGGCGGTATGCTTAAACGGCCTCGCAATGAATACGAAA TTCAGAACTCTGGACCCCCCGCAGGCTATGATATGAATAACTACTATGGAGCTGTGAGGGATGATGGCGCAAGTCTTCCTGCATTGGGTGGAGATGGCTT TCCAAGGAATGTCGGTGGTGGAATGGGAGGTCTTCCTCCGGCAGATTCTGCTATAATGGGACATTCTCGAGCAACTGGTCCACCACCAAACATGGCACCT GGTGGTTTTGGTGGTGGTCACCGACCCCCACCAACAATGCCTCGATCAGGTCGTGATACAGTACCCCTCCCACCTGATGCTTCCAACACTCTTTATGTCG AAGGGCTTCCTCACGACTGTATAAGAAGAGAAGTGGCTCACATCTTTCGTCCCTTTGTGGGGTATAAAGACTTGAGATTGGTTAGCAAGGAATCAAAGCA TCGCGGTGAACCTATAATCCTTTGTTTCGTTGACTTTGTGGATCCACCATGTGCTGCTACCGCGATGAGTGCCCTGCAAGGTCTTCCTGCATTGGGTGGA GATGGCTTTCCAAGGAATGTCGGTGGTGGAATGGGAGGTCTTCCTCCGGCAGATTCTGCTATAATGGGACATTCTCGAGCAACTGGTCCACCACCAAACA TGGCACCTGGTGGTTTTGGTGGTGGTCACCGACCCCCACCAACAATGCCTCGATCAGGTCGTGATACAGTACCCCTCCCACCTGATGCTTCCAACACTCT TTATGTCGAAGGGCTTCCTCACGACTGTATAAGAAGAGAAGTGGCTCACATCTTTCGTCCCTTTGTGGGGTATAAAGACTTGAGATTGGTTAGCAAGGAA TCAAAGCATCGCGGTGAACCTATAATCCTTTGTTTCGTTGACTTTGTGGATCCACCATGTGCTGCTACCGCGATGAGTGCCCTGCAAGCTACAGTTCTCT CGTTATCCCGGTCCCAGATCTGGTATGCCAGGTCGCGGAAAGAGGTGAACGGGGCCTCCCCATGCGAGTTCGAAATCCTAGCTTTCTCTTGA
AA sequence Show only first row Show all	>Lus10028598 pacid=23164622 polypeptide=Lus10028598 locus=Lus10028598.g ID=Lus10028598.BGIv1.0 annot-version=v1.0 MADYWNRQQQQQQQPPPLLPAGGMLKRPRNEYEIQNSGPPAGYDMNNYYGAVRDDGASLPALGGDGFPRNVGGGMGGLPPADSAIMGHSRATGPPPNMAP GGFGGGHRPPPTMPRSGRDTVPLPPDASNTLYVEGLPHDCIRREVAHIFRPFVGYKDLRLVSKESKHRGEPIILCFVDFVDPPCAATAMSALQGLPALGG DGFPRNVGGGMGGLPPADSAIMGHSRATGPPPNMAPGGFGGGHRPPPTMPRSGRDTVPLPPDASNTLYVEGLPHDCIRREVAHIFRPFVGYKDLRLVSKE SKHRGEPIILCFVDFVDPPCAATAMSALQATVLSLSRSQIWYARSRKEVNGASPCEFEILAFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76940			RNA-binding (RRM/RBD/RNP motif...		Lus10028598 [exp]	0	1
AT3G12210			DNA binding (.1.2)		Lus10018653 [exp]	6.7	0.8547
					Lus10033006 [exp]	27.1	0.8033
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10018655 [exp]	42.7	0.8180
AT2G23950			Leucine-rich repeat protein ki...		Lus10015484 [exp]	52.6	0.7992
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10016110 [exp]	62.4	0.8093
AT2G39870			unknown protein		Lus10004675 [exp]	66.3	0.8051
AT1G21320			nucleotide binding;nucleic aci...		Lus10018903 [exp]	93.5	0.7367
AT4G13640	GARP	UNE16	unfertilized embryo sac 16, Ho...		Lus10007132 [exp]	108.5	0.7956
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10007719 [exp]	111.1	0.7924
AT5G48820		ICK6, KRP3	KIP-RELATED PROTEIN 3, inhibit...		Lus10011862 [exp]	136.7	0.7924

Compare expression of checked genes

Lus10028598 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.