Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76940 191 / 2e-60 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G21320 171 / 2e-52 nucleotide binding;nucleic acid binding (.1.2) AT2G47580 50 / 3e-07 U1A spliceosomal protein U1A (.1) AT2G30260 47 / 3e-06 U2B'' U2 small nuclear ribonucleoprotein B (.1) AT3G13700 45 / 2e-05 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G13570 44 / 6e-05 SCL30A, At-SCL30A SC35-like splicing factor 30A (.1) AT2G42240 42 / 0.0002 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT1G55310 40 / 0.0006 ATSCL33, SR33, At-SCL33 SC35-like splicing factor 33 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018903 [exp] 395 / 5e-137 AT1G21320 182 / 5e-54 nucleotide binding;nucleic acid binding (.1.2) Lus10028598 [exp] 242 / 7e-79 AT1G76940 135 / 9e-38 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10042240 [exp] 47 / 4e-06 AT2G30260 352 / 2e-124 U2 small nuclear ribonucleoprotein B (.1) Lus10026413 [exp] 47 / 4e-06 AT2G30260 350 / 1e-123 U2 small nuclear ribonucleoprotein B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G070200 [exp] 245 / 2e-81 AT1G76940 215 / 4e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.012G019300 [exp] 186 / 1e-58 AT1G76940 167 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.015G009000 [exp] 183 / 1e-57 AT1G76940 170 / 8e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G224900 [exp] 125 / 2e-34 AT1G21320 122 / 2e-33 nucleotide binding;nucleic acid binding (.1.2) Potri.007G046600 [exp] 52 / 1e-07 AT2G42240 334 / 4e-115 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.003G035000 [exp] 44 / 7e-05 AT3G13700 348 / 3e-121 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10028599 pacid=23164574 polypeptide=Lus10028599 locus=Lus10028599.g ID=Lus10028599.BGIv1.0 annot-version=v1.0 ATGGCCGACGGCTACTGGAACCGGCAGCAGCAGCCGCCGCTGCAGCAGCACCCTCCCCCTCTTCTCCCCGCCGGCGGTATGCTTAAACGGCCTCGCAATG AGTACGAAATGCAGAATTCTGGACTACCCTCAGGCTATGATATGAATAACTACTATGGAAATCCTAGAGACGATGGGGCAAGTAATCAGCATGTAAAAGA CACCCAGACGATTAATTCAGCTTATGACCGATACCTTCAAAATCAAGGTCTTCCTGTGGCTTCAAGAGAAGCCCCTCCGATGGGCGGAGATGGTTACGCA AGGAACATGGGTGGTGGGGGGATGGGAGGTCTTCCTGGGGTAGATCCTGCTGTAATGGGACGCTCTCGAGCAACTGGTCCACCCAATGTGGGGACCAATG GTTTTGGTGGTCAACCACCCGGACCAAATGCAATGCCTCGATCTAATCGTGATACAGTACCCCTTCCACCTGATGCTTCCAATACTCTATATGTCGAAGG GCTTCCTCACGACTGTATAAGAAGGGAAGTGGCACACATCTTTCGACCCTTTGTCGGATATAAGGACTTGAGATTGGTTAGCAAGGAATCTAAGCATCGC GGTGAACCTATAATCCTTTGCTTTGTCGACTTTGTGGATCCTCCATGTGCTGCAACCGCAATGAGTGCCTTGCAAGGATATAGGATGGACGAGCATGACC CCGAGTCCAACTACTTAAAGCTACAGTTCTCTCGCTACCCCGGTCCCAGATCCGGTATGGCAGGTCGTGGAAAGAGGTGA
AA sequence Show only first row Show all	>Lus10028599 pacid=23164574 polypeptide=Lus10028599 locus=Lus10028599.g ID=Lus10028599.BGIv1.0 annot-version=v1.0 MADGYWNRQQQPPLQQHPPPLLPAGGMLKRPRNEYEMQNSGLPSGYDMNNYYGNPRDDGASNQHVKDTQTINSAYDRYLQNQGLPVASREAPPMGGDGYA RNMGGGGMGGLPGVDPAVMGRSRATGPPNVGTNGFGGQPPGPNAMPRSNRDTVPLPPDASNTLYVEGLPHDCIRREVAHIFRPFVGYKDLRLVSKESKHR GEPIILCFVDFVDPPCAATAMSALQGYRMDEHDPESNYLKLQFSRYPGPRSGMAGRGKR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21320			nucleotide binding;nucleic aci...		Lus10028599 [exp]	0	1
AT5G03500			Mediator complex, subunit Med7...		Lus10016217 [exp]	7.1	0.7441
AT1G21320			nucleotide binding;nucleic aci...		Lus10018903 [exp]	18.7	0.7134
AT2G28380		DRB2	dsRNA-binding protein 2 (.1)		Lus10000721 [exp]	25.4	0.6776
AT1G32190			alpha/beta-Hydrolases superfam...		Lus10040096 [exp]	31.5	0.6979
AT5G62360			Plant invertase/pectin methyle...		Lus10032233 [exp]	35.6	0.7114
AT3G51060		SRS1, STY1	STYLISH 1, SHI RELATED SEQUENC...		Lus10028352 [exp]	39.2	0.6678
AT1G58100	TCP	TCP8	TCP domain protein 8, TCP fami...		Lus10019949 [exp]	43.1	0.6914
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10001726 [exp]	46.2	0.6440
AT3G18035		HON4	winged-helix DNA-binding trans...		Lus10024594 [exp]	49.1	0.6845
AT1G25580	NAC	ANAC008, SOG1	SUPPRESSOR OF GAMMA RADIATION ...		Lus10021708 [exp]	61.7	0.6670

Compare expression of checked genes

Lus10028599 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.