Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76950 1394 / 0 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G42140 1393 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT4G14368 953 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G19420 919 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT5G12350 919 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G23270 914 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G69710 672 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G47660 523 / 3e-169 Regulator of chromosome condensation (RCC1) family protein (.1) AT1G65920 471 / 1e-148 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G63860 173 / 2e-46 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018904 [exp] 2049 / 0 AT1G76950 1520 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10029772 [exp] 1715 / 0 AT5G42140 1463 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10042800 [exp] 1640 / 0 AT5G42140 1461 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10038991 [exp] 975 / 0 AT4G14368 1265 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10030999 [exp] 962 / 0 AT4G14368 1284 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10036030 [exp] 961 / 0 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10027273 [exp] 946 / 0 AT4G14368 1269 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10024157 [exp] 847 / 0 AT5G19420 1279 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10039525 [exp] 806 / 0 AT5G19420 1245 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G070300 [exp] 1715 / 0 AT5G42140 1422 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.005G190000 [exp] 1692 / 0 AT5G42140 1407 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.008G167500 [exp] 1065 / 0 AT4G14368 1266 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.009G071800 [exp] 971 / 0 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G276900 [exp] 925 / 0 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.T124906 [exp] 896 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G026900 [exp] 895 / 0 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.003G197600 [exp] 893 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.017G139600 [exp] 596 / 0 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.004G080900 [exp] 525 / 2e-168 AT1G65920 940 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF01363 [flax] [poplar] FYVE FYVE zinc finger CL0390 [flax] [poplar] PF08381 [flax] [poplar] BRX Transcription factor regulating root and shoot growth via Pin3 CL0186 [flax] [poplar] Beta_propeller PF00415 [flax] [poplar] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Lus10028600 pacid=23164593 polypeptide=Lus10028600 locus=Lus10028600.g ID=Lus10028600.BGIv1.0 annot-version=v1.0 ATGGCAGATCTCGTTAGCTACGGTAATGCAGACCGTGACAGCGAGCAGGCATTAGTTCCTTTGAAGAAGGGTGCTCATCTTTTGAAATATGGTCGCAAGG GAAAACCTAAGCTTTATCCGTTCCGGCTTTCTTATGATACAACAACTTTGATCTGGATCTCAAGTAGTGGTGAAAGGAGTTTGAAGTTGTCTACTGTCTC TAAAATTATCCCTGGACAAAGAACTGCTGTCTTTCAACGATATCTGCGCCCAGAAAAGGACTATTTATCATTTTCCCTTATATACAATAACGGAAAGAGA TCACTTGATCTGATTTGTAAGGACAAGGTTGAGGCAGAGGCGTGGATTGCCGGCTTGAAGGCATTAATTGCTTCCCGTCAAAGTGGACGCTCCAAAATTG ATGGATGGAATGATGGAGGGCTCTACATTGATGACAGCAAGGATTTGACATCAAATAGTGCTACTGATAGTTCAGTTAGCATCACACGGGATACCAGCTC TCCGGAGGTTACTGTTAGCTATAATCCCACTATTTCTCCTAAGAGGTCTTGGCCTGAGAACTCTCCCCAGTCGGATAGATCACATGTAGGATTAGAAAAC AGAAGCATGCAAGTTAAAGGATCCAGCTCAGATGCTTTCCGAGTCAGTGTTTCCAGTCAGCCTAGCACTTCTAGCCATGGATCTGCACAAGATGACTGTG ATGCTTTGGGTGATGTATACTTGTGGGGTGAGATCATTACCGATAGCGCTGTCAAGATTAGTGTCGATAAAAATGCAACATACTTGAGTTCTAGAGCAGA TGTTCTTGTTCCGAAGCCACTAGAGTCTAATGTGGTTTTAGATGTACATCACATAGCCTGTGGTGTAAAGCATGCAGCCTTAGTCACAAGGCAAGGCGAA GTCTTTACATGGGGTGAAGAAGCTGGTGGCCGTCTTGGTCATGGTGTCGGAAAGGATTCTATTCAACCCCGTCTCATTGAATCACTTGCAGTTACTAGCG TTGATTTTGTGGCATGTGGGGAGTTCCATTCTTGTGCAGTCACGATGGGTGGGGAACTCTATACATGGGGGGATGGCACACACAATGCTGGTATTCTTGG TCATGGTACTAATGTCAGTCACTGGATACCTAAGAGAATCTCAGGTCCTCTTGAGGGACTGCAAATTGCTTCAGTAACCTGTGGGCCGTGGCATACGGCA TTGATAACATCTACGGGGCAGCTTTTTACTTTTGGAGATGGGACTTTTGGTGTCCTGGGTCATGGTGACAGACACAACGTTGCTTATCCCAGAGAAGTAG ATTCATTATCTGGCTTAAGAACCATTGCTGTTGCCTGTGGAGTGTGGCATACTGCTGCTGTGGTGGAGGTAATTGTCACACAGTCTAGTTCGAGTATTTC CTCTGGAAAACTATTTACCTGGGGCGACGGAGATAAAAATCGTCTTGGACAAGGAGATAAGGAACCTCGGTTGAAACCCACATGCGTGCCAGCCTTGATC GACTACAATTTTCATAAAGTTGCCTGCGGGCACAGTCTGACTGTTGGTTTGACAACGTCGGGACATGTATTTACAATGGGAAGTACCGTTTACGGTCAGC TAGGCAGTCCTCAGGCTGATGGGAAGATGCCTTGCTTGGTTCAAGATAAACTTGCTGGCGAAAGTGTTGACGAAATCGCTTGTGGTTCATATCATGTTGC CGTTTTAACTTCCAGAAACGAAGTTTGTACTTGGGGAAAGGGCGCCAATGGGAGGTTGGGGCACGGGGATATCGAAGACCGTAAAGCACCAACTCTAGTT GAAGCCTTGAAAGATAGACATGTAAAGTACATTGCTTGTGGTGCAAGCTACACTGCAGCTATATGTCTTCATAAATGGGTATCCGGTGCCGAGCAATCTC AGTGTTCTGCTTGCAGACTGGCTTTCGGGTTTACTCGAAAGAGACACAACTGCTACAACTGTGGACTTGTACATTGTCATTCGTGCAGTTCCAGGAAAGC GATAAGAGCCGCCCTGGCTCCCAATCCTGGGAAACCGTGTCGTGTGTGTGATTCCTGCTATGCAAAGCTATGCAAGGTTTCAGAATCTAATAACATCAGA AGAAACTCAGTACCCCGCCTTTCAGTTGAAAACAAGGACAGGTTGGACAAGTCTGAGATTAGGTCATCCAAGGCTAGTTTGCCTTCTAATGTAGATTTGA TTAAGCAATTGGATAGTAAAGCAGCAAAACAAGGGAAGAAAGCTGAAACATTTTCCTTGGTTCGCTCCTCTCAAACACCATCGTTTTTGCAGCTTAGAGA TGTTGTTTCGTCCACTAATTTTGAATTGCGGCCCAAGGTTCCCAGGCCGGTTCTTACACCATCGGGTATGAGTTCGAGGTCTGTATCGCCTTTCTCGAGG AGATCAAGTCCCCCTAGATCAGCAACACCTGTTCCGACAACATCTGGCCTTTCCTTCTCGAAAAGTATTGCTGATAGTCTGAAGAAAACAAACGAGCTTC TGAATCATGAAGTGCTGAAGTTGCGTTCGCAGGTTGACAGCCTGAAACAAAGATGTGAATTCCAAGACTTGGAGCTTCAAAGATCGGCCAAGAAGATGCA GGAGGCAATGGCGATGGCTGCCGAAGAATCAGCTAAATCTAGAGCTGCGAAAGATGTCATAAAGTCACTCACTGCACAGCTTAAGGATTTAGCTGAAAGG TTGCCACCAGGTGTCTACGACCCTGAGAGCGTGAAGCCAGCAGCACATCTTCTACCAAACGGTTTGGAGTCGAACGGTGTTCATCATCCCGAAACCAATG GACACCGCCATTCGAGGTCTGACTCAATTAGTGGGGTTTCGTTATCGTCTCCCACTAGAATCGATTTCAGTTCAGCAAATGGAAACCACCATGGTTCTTC TCTTCAATCATTTGGGGATCTGTCGGGACTCAACGGCAGAGATGATCATGCAGACGCCAGGCTGTCAAACGGAACTGGGGCGCGTTCAAGTAGAAGTGCA TCGGAGTCCGTTGATGGGAAGGAATCTAGGAAAGTCCAAGATGGAGAGAACGGGTCAAGACCTCACGATCCAACACTCCCTGACAATAGTCATCAGGTTG AGGCAGAATGGATCGAACAGTACGAGCCCGGTGTGTACATAACTCTAGTGGCCCTGCGCGATGGAACCAGAGATCTCAAACGCGTACGCTTCAGCCGGAG AAGATTCGGGGAGCATCAAGCAGAGACATGGTGGTCGGAGAATCGCGAGAAAGTATACGAGAAATACAACGTTCGTGGATCAGACAAGTCATCTGTTTCC GGTCAGGCTGCTCGACGATCAGAAGGCTCCGTGTCATCCGCTTCCTAG
AA sequence Show only first row Show all	>Lus10028600 pacid=23164593 polypeptide=Lus10028600 locus=Lus10028600.g ID=Lus10028600.BGIv1.0 annot-version=v1.0 MADLVSYGNADRDSEQALVPLKKGAHLLKYGRKGKPKLYPFRLSYDTTTLIWISSSGERSLKLSTVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKR SLDLICKDKVEAEAWIAGLKALIASRQSGRSKIDGWNDGGLYIDDSKDLTSNSATDSSVSITRDTSSPEVTVSYNPTISPKRSWPENSPQSDRSHVGLEN RSMQVKGSSSDAFRVSVSSQPSTSSHGSAQDDCDALGDVYLWGEIITDSAVKISVDKNATYLSSRADVLVPKPLESNVVLDVHHIACGVKHAALVTRQGE VFTWGEEAGGRLGHGVGKDSIQPRLIESLAVTSVDFVACGEFHSCAVTMGGELYTWGDGTHNAGILGHGTNVSHWIPKRISGPLEGLQIASVTCGPWHTA LITSTGQLFTFGDGTFGVLGHGDRHNVAYPREVDSLSGLRTIAVACGVWHTAAVVEVIVTQSSSSISSGKLFTWGDGDKNRLGQGDKEPRLKPTCVPALI DYNFHKVACGHSLTVGLTTSGHVFTMGSTVYGQLGSPQADGKMPCLVQDKLAGESVDEIACGSYHVAVLTSRNEVCTWGKGANGRLGHGDIEDRKAPTLV EALKDRHVKYIACGASYTAAICLHKWVSGAEQSQCSACRLAFGFTRKRHNCYNCGLVHCHSCSSRKAIRAALAPNPGKPCRVCDSCYAKLCKVSESNNIR RNSVPRLSVENKDRLDKSEIRSSKASLPSNVDLIKQLDSKAAKQGKKAETFSLVRSSQTPSFLQLRDVVSSTNFELRPKVPRPVLTPSGMSSRSVSPFSR RSSPPRSATPVPTTSGLSFSKSIADSLKKTNELLNHEVLKLRSQVDSLKQRCEFQDLELQRSAKKMQEAMAMAAEESAKSRAAKDVIKSLTAQLKDLAER LPPGVYDPESVKPAAHLLPNGLESNGVHHPETNGHRHSRSDSISGVSLSSPTRIDFSSANGNHHGSSLQSFGDLSGLNGRDDHADARLSNGTGARSSRSA SESVDGKESRKVQDGENGSRPHDPTLPDNSHQVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENREKVYEKYNVRGSDKSSVS GQAARRSEGSVSSAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76950		PRAF1	Regulator of chromosome conden...		Lus10028600 [exp]	0	1
AT3G53320			unknown protein		Lus10023170 [exp]	1.7	0.8999
AT3G53760		ATGCP4	GAMMA-TUBULIN COMPLEX PROTEIN ...		Lus10042807 [exp]	2.8	0.8970
AT5G59740			UDP-N-acetylglucosamine (UAA) ...		Lus10040866 [exp]	3.9	0.8938
AT3G19540			Protein of unknown function (D...		Lus10026604 [exp]	5.1	0.8714
AT5G20730	ARF	MSG1, IAA21, BI...	MASSUGU 1, indole-3-acetic aci...		Lus10033635 [exp]	5.7	0.8805
AT5G35430			Tetratricopeptide repeat (TPR)...		Lus10027703 [exp]	7.3	0.8765
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10033440 [exp]	8.1	0.8784
AT5G18230			transcription regulator NOT2/N...		Lus10002632 [exp]	8.2	0.8905
AT1G73930			unknown protein		Lus10032474 [exp]	8.7	0.8885
AT4G10070			KH domain-containing protein (...		Lus10002947 [exp]	10.1	0.8872

Compare expression of checked genes

Lus10028600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.