Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028722 [exp] 102 / 2e-26 AT2G42730 76 / 1e-14 F-box family protein (.1.2) Lus10028649 [exp] 100 / 2e-25 AT1G21380 452 / 7e-152 Target of Myb protein 1 (.1) Lus10018912 [exp] 89 / 8e-22 ND / Lus10028626 [exp] 78 / 2e-18 AT5G48920 51 / 7e-08 tracheary element differentiation-related 7 (.1) Lus10021237 [exp] 78 / 3e-18 ND / Lus10011267 [exp] 78 / 7e-18 ND 39 / 0.002 Lus10028610 [exp] 71 / 2e-16 ND / Lus10031019 [exp] 39 / 0.0003 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028601 pacid=23164606 polypeptide=Lus10028601 locus=Lus10028601.g ID=Lus10028601.BGIv1.0 annot-version=v1.0 ATGACCTTAGGTAACGAGTTTATTTGCAGCGAAATGTTTAGAGGCCTTTCAGGATGCGTTGGCCGATTGGTGTCCCTCTTGTTGAAGTCGTACCACCAAT TACGTTCGAGCCAGCCTGGGTTGCAGTTACATCAACTGCGTGAGGATGTGGTTAAAGTACGCCGGGATAGCATCAAAGTGGTGGAGGTTTTTGGGTTTCG TGGTAACAAGATGGAGTGCAAGTTTATGGAGTACGTGCTGAAATATTTTGCGGGGTTAGAAAAAATAGTGATTGATTGGTCGACTACTTCTATCTTTTCT GATGACAGTATTTTCACTTATGTACGGAATGGGGGAGTTGGCCCTGAAGCCGAAAAGGCTGCGTTGGAGCTGAAATCACAAGCACCCCCAACAGTTGAAG TCGTTTTAATTTAG
AA sequence Show only first row Show all	>Lus10028601 pacid=23164606 polypeptide=Lus10028601 locus=Lus10028601.g ID=Lus10028601.BGIv1.0 annot-version=v1.0 MTLGNEFICSEMFRGLSGCVGRLVSLLLKSYHQLRSSQPGLQLHQLREDVVKVRRDSIKVVEVFGFRGNKMECKFMEYVLKYFAGLEKIVIDWSTTSIFS DDSIFTYVRNGGVGPEAEKAALELKSQAPPTVEVVLI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10028601 [exp]	0	1
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10010802 [exp]	11.9	0.7755
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Lus10038201 [exp]	19.6	0.7372
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Lus10026681 [exp]	20.3	0.7711
AT1G66520		PDE194	pigment defective 194, formylt...		Lus10000450 [exp]	25.0	0.7689
					Lus10011613 [exp]	28.1	0.6730
AT5G59510		RTFL5, DVL18	DEVIL 18, ROTUNDIFOLIA like 5 ...		Lus10001569 [exp]	55.6	0.7271
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10039705 [exp]	59.5	0.7277
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10006360 [exp]	59.5	0.7037
AT2G24210		AtTPS10	terpene synthase 10 (.1)		Lus10006355 [exp]	67.4	0.7222
AT3G59160			F-box/RNI-like superfamily pro...		Lus10003943 [exp]	81.0	0.7054

Compare expression of checked genes

Lus10028601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.