Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80960 50 / 1e-06 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) AT5G53840 49 / 3e-06 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G13570 45 / 3e-05 F-box/RNI-like superfamily protein (.1) AT4G13960 44 / 0.0001 F-box/RNI-like superfamily protein (.1) AT1G55660 44 / 0.0001 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) AT5G02910 43 / 0.0001 F-box/RNI-like superfamily protein (.1.2) AT1G58310 43 / 0.0002 F-box/RNI-like superfamily protein (.1) AT2G39415 41 / 0.0002 F-box family protein (.1) AT1G67390 43 / 0.0003 F-box family protein (.1) AT3G60790 43 / 0.0003 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003089 [exp] 186 / 2e-57 AT5G53840 54 / 3e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10028722 [exp] 156 / 1e-43 AT2G42730 76 / 1e-14 F-box family protein (.1.2) Lus10028721 [exp] 130 / 2e-37 AT5G53840 56 / 5e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10011268 [exp] 124 / 3e-34 AT5G41630 52 / 7e-08 F-box/RNI-like superfamily protein (.1) Lus10018863 [exp] 114 / 7e-30 AT5G44950 62 / 1e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10004525 [exp] 108 / 4e-26 AT4G01840 402 / 3e-137 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) Lus10028558 [exp] 94 / 1e-23 AT3G51530 56 / 4e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10005646 [exp] 63 / 2e-11 AT1G80960 57 / 1e-09 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) Lus10037151 [exp] 62 / 5e-11 AT5G02700 60 / 2e-10 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G224975 [exp] 66 / 7e-12 AT5G53840 48 / 4e-06 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G098700 [exp] 52 / 2e-07 AT1G80960 86 / 6e-18 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) Potri.011G024600 [exp] 42 / 0.0005 AT4G26350 95 / 9e-21 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.014G059100 [exp] 42 / 0.0005 AT5G07670 451 / 2e-155 RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10028602 pacid=23164635 polypeptide=Lus10028602 locus=Lus10028602.g ID=Lus10028602.BGIv1.0 annot-version=v1.0 ATGGGCTTTGGATCCAATGGCGGATCAAAACACCCAGCCCACCCAATAATATGTATTCGAGGAACAGGGAGAAGAGACGAGAAAACAATGGCGGCTTTGG ACTCTGTTTCTACAGCACAGGAAGGAGAAGAAGTTGATTGTATAACTCAGAAGTTATTCGATAAAGTTTGTAACTTGGGAGAAGGATTGGATTGGATTAG TCAGTTGCCTGATGAAGTTCTCTTCAATATCGTATCTCGTTTGACTTTCGCCGAAGCTTTTAGAACTTCAGTCCTCTCAAGTAGGTGGATAGACTTGTGT AAATCATCCGTTTCGGTGCTCGACTTTGATGCCTCGGAGGAGTTGCGAGCTATTCGCAAGCTGCCCTCATTCAAAGCTATAAAAATGCTTCCCGAGAGTA GGCGCCGAGGAATGTACAATCACATTAAAACTCCAGCCGGAATGCATGATATTGGGTTCCTGAGATCCTTGCGCTTGAGTTATGTTGATGTTGGGTGTGA GATTCTTGCACATTTCATTGCCAATGCCCCCCTGCTTGAAGAGTTAGTTGTACATTATTCTGATCTCCTAAAAAAGCTCAAGGTTGTTGGTTCTTCGCAC TCACCACTGCCATTGAAGCACTTGGAATTGGTGTCCCTCATATTGAAGTCGGCTGAAATAGCGATGGCTTCTCAATCTTTCTCTCAAGGAAGGCAAGCAT TCGAAAATAAGGGAGATATGGCTTTGGACGCTGTTCGCGGTACAGCACAACAAGGAGAAGAAGTTGATGGTGTAACTCATAAGTTATTGGATGAAGTTTG TAACTTGGGCGAAGGATTGGATTGGATTAGCCAGCTCCCCGATGAACTTCTCATTGCTATCGTATCTCGTTTGTCTCTCACGGGAGCCATTGCAACTTCT GTCCTCTCAAGCAGGTGGGTAGACACTTGTGGAAATCAGCGGTCTCGGTGCTCGACTTTGATGCCACGGGGGAGTTGCTAG
AA sequence Show only first row Show all	>Lus10028602 pacid=23164635 polypeptide=Lus10028602 locus=Lus10028602.g ID=Lus10028602.BGIv1.0 annot-version=v1.0 MGFGSNGGSKHPAHPIICIRGTGRRDEKTMAALDSVSTAQEGEEVDCITQKLFDKVCNLGEGLDWISQLPDEVLFNIVSRLTFAEAFRTSVLSSRWIDLC KSSVSVLDFDASEELRAIRKLPSFKAIKMLPESRRRGMYNHIKTPAGMHDIGFLRSLRLSYVDVGCEILAHFIANAPLLEELVVHYSDLLKKLKVVGSSH SPLPLKHLELVSLILKSAEIAMASQSFSQGRQAFENKGDMALDAVRGTAQQGEEVDGVTHKLLDEVCNLGEGLDWISQLPDELLIAIVSRLSLTGAIATS VLSSRWVDTCGNQRSRCSTLMPRGSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80960			F-box and Leucine Rich Repeat ...		Lus10028602 [exp]	0	1
AT3G08020			PHD finger family protein (.1)		Lus10016404 [exp]	2.0	0.8504
AT5G58130		ROS3	REPRESSOR OF SILENCING 3, RNA-...		Lus10040584 [exp]	6.2	0.8428
AT5G25800			Polynucleotidyl transferase, r...		Lus10029748 [exp]	9.4	0.8417
AT3G24200			FAD/NAD(P)-binding oxidoreduct...		Lus10011742 [exp]	10.4	0.7910
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10003447 [exp]	15.3	0.7916
AT1G17210		ATILP1	ARABIDOPSIS IAP-LIKE PROTEIN, ...		Lus10023288 [exp]	18.7	0.8463
AT4G01860			Transducin family protein / WD...		Lus10038045 [exp]	18.7	0.8364
					Lus10012794 [exp]	22.8	0.8324
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10024895 [exp]	25.9	0.8170
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10020893 [exp]	28.7	0.8124

Compare expression of checked genes

Lus10028602 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.