Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43770 89 / 9e-19 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT3G02890 71 / 1e-12 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G16680 69 / 7e-12 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009530 [exp] 71 / 1e-12 AT5G16680 395 / 5e-115 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10020350 [exp] 71 / 2e-12 AT3G02890 439 / 2e-131 RING/FYVE/PHD zinc finger superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G189400 [exp] 113 / 9e-27 AT1G43770 142 / 1e-37 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.007G110400 [exp] 97 / 2e-21 AT1G43770 135 / 1e-35 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.005G173200 [exp] 89 / 1e-18 AT1G43770 187 / 2e-54 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.019G041900 [exp] 69 / 7e-12 AT5G16680 288 / 6e-79 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.013G077900 [exp] 66 / 6e-11 AT5G16680 536 / 1e-165 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.003G091000 [exp] 61 / 2e-09 AT3G02890 177 / 3e-45 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.014G040100 [exp] 54 / 3e-07 AT5G61120 127 / 1e-31 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028603 pacid=23164546 polypeptide=Lus10028603 locus=Lus10028603.g ID=Lus10028603.BGIv1.0 annot-version=v1.0 ATGAACGAGTATGGGATGAAGAGAGTGGACATGTCTCGCTGGGTGGATGCTAGTATTATGTATTTTCTTACTCGCTTCTCCTTTTATTTGCAAAATCATT GCAGATATTGCTTACACCCATTACCCGGTCTTGAAGAATGTGTGCTGTGGTTTTGTGAGGATTGCAAGCCGAAGTTTGAAAGTTTGTCTCAGTCTAAGAA ACATCCTATCTTGGTCAAAGGAAGTGACTATGCTACTCTGAAGAAGGCAACGAAAGCACGCGGTTCCTCATTGACCAAAGTTGATGTGTTAAGAATTGAA ATCTACTCCTCTCCGCAAAATGCCAAGGCACCAAGCTTAAAAAATAGCACGGAGGATGTGGAGCTTCTGATACAGAATGAAGGAGATCGGTCTCATGTTC AAGATCTACAAACTGTTTCAGTGGAGGTCCAGCATGGTTGTTTGAAGACGTTTGATAGCAGTGACCAGCATCAAAGAAAGAAGAGATTGAGAAACGACGA TGAAAATGAGGCTTCACTTAGAAAATGTAATGGTTTGGACAAGGAAGCGACGGTTGAACAGGCTGAACCTCTTTCAAGCAAAGAGTGTGTTAAGATAAAT GATAACAATGAGGAACGTGAAGGACCAAAGAGACTAAAAATAGTTGCCGAAACTGAGGCTCCCCTTCGTGATTTCCAATCTCCTGAGATTATTTGCCACA AGGTTGGAGAGCAGGACAAAGAACTTGGGAAAGGTGACCGGCCAAATGAGAAAGCAATGGTTGAACAGGTTCAATGTCTTACGACTGAAGATTCGATGGT TGAACTTGGAAAAGGTGACCGGCCAAATGATGAAACGATGGTTGAACAGACTCAATGTCTTACAACTGAAGATTCGTTCACGACACGTAATTCCAATAAC AATCATGAAAAAGAGAACAGATTGAAAAAAGACAATGAACATGGGGCTTCCCCTTGTGAACCTGAACGTTTTAAGGTCAGTTCCTCCATGGCTGGAGAGC AGGATGAAGAACTTGGAAGATGTCACAATATGGAGGAAGACACCATGGTTGCACATGGTGAACCTCTCACAGGCAAAGATTCTCAAGTTGGTGTTTGTGA AATGCCTCTTCAAACACTTGTCTGTGAGGATATGGAGACGGAGCATGACAAGGCTGATCGTAATGACACATGCGCTAGAGTAACCGAGGCAACAAATTTA TTACCGAAACTGCTTTCCACAGACTTACTCCCTCGCCTAGATGTATGGCCAAAGGGATTCCAAAAGTGCAGCCCTGGCGGAAACAGTATTGCCCTTTACT TCTTCCCCGAAAGCGAACGCGATGAGAAGATATCCAGTAAACTAGTCCAACGTATGATCAACCAAGACCTTGGAATAAAATCAGTTCTCGAAGATGCTGA GCTCTTGATATTCACTTCGACAGTGTTGCCGGAGCAGTACCGGAAGTTCCAGGAGAAAGAGTATTTATGGGGAGTATTCAGAGGGAAGCAACCATCAAAA GTAGCTCGTGATGTCTCCAATCAGAAAAACCACACTGAGATCCAGAACACACCAAGTCCGGTTAGTCCTTTAAGCTAA
AA sequence Show only first row Show all	>Lus10028603 pacid=23164546 polypeptide=Lus10028603 locus=Lus10028603.g ID=Lus10028603.BGIv1.0 annot-version=v1.0 MNEYGMKRVDMSRWVDASIMYFLTRFSFYLQNHCRYCLHPLPGLEECVLWFCEDCKPKFESLSQSKKHPILVKGSDYATLKKATKARGSSLTKVDVLRIE IYSSPQNAKAPSLKNSTEDVELLIQNEGDRSHVQDLQTVSVEVQHGCLKTFDSSDQHQRKKRLRNDDENEASLRKCNGLDKEATVEQAEPLSSKECVKIN DNNEEREGPKRLKIVAETEAPLRDFQSPEIICHKVGEQDKELGKGDRPNEKAMVEQVQCLTTEDSMVELGKGDRPNDETMVEQTQCLTTEDSFTTRNSNN NHEKENRLKKDNEHGASPCEPERFKVSSSMAGEQDEELGRCHNMEEDTMVAHGEPLTGKDSQVGVCEMPLQTLVCEDMETEHDKADRNDTCARVTEATNL LPKLLSTDLLPRLDVWPKGFQKCSPGGNSIALYFFPESERDEKISSKLVQRMINQDLGIKSVLEDAELLIFTSTVLPEQYRKFQEKEYLWGVFRGKQPSK VARDVSNQKNHTEIQNTPSPVSPLS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G43770			RING/FYVE/PHD zinc finger supe...		Lus10028603 [exp]	0	1
AT2G01210			Leucine-rich repeat protein ki...		Lus10043480 [exp]	2.0	0.8887
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Lus10010577 [exp]	6.0	0.8862
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10009402 [exp]	10.5	0.8633
AT1G69440		ZIP, AGO7	ZIPPY, ARGONAUTE7, Argonaute f...		Lus10037136 [exp]	15.5	0.8278
AT3G42860			zinc knuckle (CCHC-type) famil...		Lus10012985 [exp]	15.5	0.8554
AT4G04970		ATGSL01, ATGSL1	GLUCAN SYNTHASE LIKE-1, GLUCAN...		Lus10032069 [exp]	16.7	0.8594
AT4G34980		SLP2	subtilisin-like serine proteas...		Lus10025048 [exp]	18.3	0.8605
AT3G14470			NB-ARC domain-containing disea...		Lus10022351 [exp]	18.7	0.8263
AT5G53180		ATPTB2	polypyrimidine tract-binding p...		Lus10014931 [exp]	20.4	0.8449
AT2G03050		SOLDAT10, EMB93	SINGLET OXYGEN-LINKED DEATH AC...		Lus10030451 [exp]	20.4	0.8372

Compare expression of checked genes

Lus10028603 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.