Plant FIBer expression Database

Lus10028604 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018905
[exp]
117 / 7e-34 ND /
Lus10037918
[exp]
62 / 1e-12 ND /
Lus10029768
[exp]
48 / 7e-07 AT1G21326 79 / 4e-18 VQ motif-containing protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G189300
[exp]
64 / 2e-12 AT1G21326 75 / 4e-16 VQ motif-containing protein (.1)
Potri.002G070600
[exp]
61 / 4e-11 AT1G21326 76 / 3e-16 VQ motif-containing protein (.1)
PFAM info
Representative CDS sequence
>Lus10028604 pacid=23164599 polypeptide=Lus10028604 locus=Lus10028604.g ID=Lus10028604.BGIv1.0 annot-version=v1.0
ATGCTTCTCCTTCTTAATCCCCCCTTTCCTCTTTCAAAAACCTTCTCTCCACCACCACCGTCTTTTCCTCCTCCGCCGCCGTCCGCCGACCACCGTACAC
TTCTCTTACAGCGCCGCCAAATGGATTCATCAGATTTCCCAGTCGCCAGATCTCCACGAAAGGAGCTCCAAGGCCCCCGCCCGCCAGCTCTCAAAGTCCG
TAGAGCGATGTCTCCGGCGGCGAGGTACGCGTCGATTGAGAAGACGAGGTCGCCGAAGGAGAAGTTGGGCGGTAATAATTATAATCAGAATCAGATGGGT
AATGGCGATTTGGGGGATTTCTTCATGGAAGGAGTGGAGATGGGGGAGAGATTGCCGCCGGGGATATTGTCTCCCGGTCCCGGTTCGTTGCCGCCGATTT
CTCCGAGCTTCTTCTGTCCGCCGATTGCTTCGAATCCGGATCCTAGCTCCGTCGGGTTCTTCCACGATCTGAGTCCGACGGGTTTGCATAGCAGCAGGGG
GTTTTTAGAAGGAGGGCTGTTGCCCAGTCCAAATAACTTCATCGCTGGATTCTCCCCGCACGGTAGCTCGCCGTACCCGTCGATTGACCTCTTCAACAAT
TTCAGCTCCGGCAACTTTGACTTCTGA
AA sequence
>Lus10028604 pacid=23164599 polypeptide=Lus10028604 locus=Lus10028604.g ID=Lus10028604.BGIv1.0 annot-version=v1.0
MLLLLNPPFPLSKTFSPPPPSFPPPPPSADHRTLLLQRRQMDSSDFPVARSPRKELQGPRPPALKVRRAMSPAARYASIEKTRSPKEKLGGNNYNQNQMG
NGDLGDFFMEGVEMGERLPPGILSPGPGSLPPISPSFFCPPIASNPDPSSVGFFHDLSPTGLHSSRGFLEGGLLPSPNNFIAGFSPHGSSPYPSIDLFNN
FSSGNFDF

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10028604
[exp]
0 1
AT3G22560 Acyl-CoA N-acyltransferases (N... Lus10039343
[exp]
18.4 0.6690
AT1G01720 NAC ATAF1, ANAC002 Arabidopsis NAC domain contain... Lus10042731
[exp]
33.3 0.6651
AT4G04955 ATALN allantoinase (.1) Lus10025648
[exp]
55.0 0.6361
AT1G16350 Aldolase-type TIM barrel famil... Lus10000276
[exp]
56.0 0.6359
AT2G44525 Protein of unknown function (D... Lus10012187
[exp]
57.1 0.6148
AT3G21790 UDP-Glycosyltransferase superf... Lus10036087
[exp]
59.5 0.6401
AT5G08790 NAC ATAF2, ANAC081 Arabidopsis NAC domain contain... Lus10003848
[exp]
72.0 0.6047
AT4G31130 Protein of unknown function (D... Lus10030038
[exp]
83.4 0.6182
AT5G20130 unknown protein Lus10038580
[exp]
85.5 0.6336
AT2G34200 RING/FYVE/PHD zinc finger supe... Lus10025394
[exp]
105.0 0.6140

Lus10028604 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.