Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21470 533 / 0 ATFMN/FHY riboflavin kinase/FMN hydrolase (.1) AT4G25840 126 / 2e-33 GPP1 glycerol-3-phosphatase 1 (.1) AT5G57440 122 / 2e-32 GPP2, GS1 GLYCEROL-3-PHOSPHATASE 2, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G11570 71 / 2e-13 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT1G56500 67 / 1e-11 haloacid dehalogenase-like hydrolase family protein (.1) AT2G38740 63 / 3e-11 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G48420 61 / 3e-10 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G39970 58 / 4e-09 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G41250 43 / 0.0002 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018906 [exp] 692 / 0 AT4G21470 556 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10018435 [exp] 586 / 0 AT4G21470 553 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10025466 [exp] 133 / 1e-36 AT5G57440 357 / 1e-126 GLYCEROL-3-PHOSPHATASE 2, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10006954 [exp] 129 / 8e-35 AT5G57440 387 / 4e-137 GLYCEROL-3-PHOSPHATASE 2, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10020699 [exp] 79 / 1e-15 AT1G56500 1467 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Lus10002002 [exp] 76 / 9e-15 AT4G11570 491 / 9e-175 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10035494 [exp] 75 / 1e-14 AT4G11570 493 / 2e-175 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10029840 [exp] 76 / 2e-14 AT1G56500 1528 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Lus10040116 [exp] 67 / 2e-12 AT2G38740 347 / 3e-122 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G077200 [exp] 568 / 0 AT4G21470 561 / 0.0 riboflavin kinase/FMN hydrolase (.1) Potri.005G183400 [exp] 560 / 0 AT4G21470 575 / 0.0 riboflavin kinase/FMN hydrolase (.1) Potri.018G092500 [exp] 129 / 3e-35 AT5G57440 398 / 2e-142 GLYCEROL-3-PHOSPHATASE 2, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.001G104366 [exp] 74 / 2e-14 AT4G11570 494 / 9e-176 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.003G127100 [exp] 70 / 4e-13 AT4G11570 493 / 2e-175 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.001G147400 [exp] 68 / 6e-13 AT2G38740 350 / 2e-123 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.003G086900 [exp] 68 / 9e-13 AT2G38740 359 / 6e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.001G147300 [exp] 66 / 4e-12 AT2G38740 360 / 5e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.014G043500 [exp] 64 / 2e-11 AT2G38740 297 / 1e-101 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.013G007800 [exp] 63 / 2e-10 AT1G56500 1489 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01687 [flax] [poplar] Flavokinase Riboflavin kinase CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10028605 pacid=23164459 polypeptide=Lus10028605 locus=Lus10028605.g ID=Lus10028605.BGIv1.0 annot-version=v1.0 ATGTCAGCTCCAAATTCCACGAAGAAGCCAGTCTCAGCCGTGATTCTCGATTTGGACGGCACCCTTCTTGATACAGATGGGTTGGTGGCTGAGGTTATGA AAGAGTTCTTGGTGAAGTATGGGAAACAATGGGATGGCAGAGAAGCTCTGGAGATATTGGGGATGGCACCTAAAGAAGCTTCTGCGGTTATAGTGAAAGA ATATGAGCTTCCTTGTTCCACTGAGGAGTTCATTGCAGATATCACGCCATTGTTCTCTAACAAATGGGGCAAGGTTAAAGCTCTTCCAGGTGCAAATCGG TTGATTAAGCACCTAACCGATCATAAAATACCCATGGCGTTGGCTTCAAACTCGCCGAGAGCAAGCATTGAAGCTAAGATATCGTGTCACCAAGGCTGGA AGGAATCGTTCTCGGTGATTATCGGTGGCGATGAAGTTAGAGCCGGGAAGCCATCCCCCGAAATATTCTTGGAAGCAGCTAACAGGCTAAAGATCGAACC TTTACGCTGCTTAGTATTTGAAGATTCCGTGACTGGAGTCACCGGTGGCAAAGCTGCCGGGATGCAAGTGATTGCAGTTCCCTCGATCCCGAAGCAATCC CATCTCTATACATCAGCAGACGAAGTTATCAATTCTCTTCTCGACTTCCATCCAGAAGATTGGGGACTCCCCTCTTTCGAAGACTGGATTGAGGGTACTT TGCCAATAGAGCCTTGGCACATTGGTGGCCCAGTAATCAAAGGATATGGCCGCGGCTCGAAAGTTCTCGGGATCCCTACAGCTAATCTATCGACAGAAGG GTATTCGGATATAGTTTCGCAACATACGGCGGGGGTGTATTTTGGATGGGCAAAACTGTCAACTAGAGGTGTCTACAAGTTTGCAATGAGCATTGGTTGG AACCCTTATTTTAACAACACAGAGAAAACCATTGAGCCATGGTTGCTTCATGAATTCCAAGACGATTTCTATGGCGAAGATCTCCGTCTGGTTATAGTTG GCTACATTCGACCCGAGGCGAATTTCCCGAGCCTGGAGAGCTTGATCGCAAAGATTCACGAGGACGGTAGAATCGCAGAGAAGGCACTTGATCTTCCACA GTACTCAATTTACAAGGATGACTCATTCTTCACATAA
AA sequence Show only first row Show all	>Lus10028605 pacid=23164459 polypeptide=Lus10028605 locus=Lus10028605.g ID=Lus10028605.BGIv1.0 annot-version=v1.0 MSAPNSTKKPVSAVILDLDGTLLDTDGLVAEVMKEFLVKYGKQWDGREALEILGMAPKEASAVIVKEYELPCSTEEFIADITPLFSNKWGKVKALPGANR LIKHLTDHKIPMALASNSPRASIEAKISCHQGWKESFSVIIGGDEVRAGKPSPEIFLEAANRLKIEPLRCLVFEDSVTGVTGGKAAGMQVIAVPSIPKQS HLYTSADEVINSLLDFHPEDWGLPSFEDWIEGTLPIEPWHIGGPVIKGYGRGSKVLGIPTANLSTEGYSDIVSQHTAGVYFGWAKLSTRGVYKFAMSIGW NPYFNNTEKTIEPWLLHEFQDDFYGEDLRLVIVGYIRPEANFPSLESLIAKIHEDGRIAEKALDLPQYSIYKDDSFFT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21470		ATFMN/FHY	riboflavin kinase/FMN hydrolas...		Lus10028605 [exp]	0	1
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Lus10012090 [exp]	1.0	0.8728
AT1G03250			unknown protein		Lus10012370 [exp]	5.3	0.8704
AT3G45620			Transducin/WD40 repeat-like su...		Lus10034751 [exp]	6.9	0.8451
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Lus10020513 [exp]	8.5	0.7966
AT3G16175			Thioesterase superfamily prote...		Lus10006837 [exp]	8.7	0.8340
AT5G01220		SQD2	sulfoquinovosyldiacylglycerol ...		Lus10002499 [exp]	12.0	0.7493
AT4G21470		ATFMN/FHY	riboflavin kinase/FMN hydrolas...		Lus10018906 [exp]	13.7	0.8388
AT4G38060			unknown protein		Lus10032845 [exp]	16.4	0.8191
AT1G62940		ACOS5	acyl-CoA synthetase 5 (.1)		Lus10038259 [exp]	18.2	0.7471
AT2G44300			Bifunctional inhibitor/lipid-t...		Lus10026220 [exp]	20.0	0.7490

Compare expression of checked genes

Lus10028605 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.