Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02290 206 / 9e-61 unknown protein AT3G45830 143 / 5e-36 unknown protein AT5G13950 71 / 2e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018907 [exp] 971 / 0 AT1G02290 210 / 3e-62 unknown protein Lus10018121 [exp] 144 / 2e-36 AT3G45830 803 / 0.0 unknown protein Lus10036145 [exp] 142 / 7e-36 AT3G45830 1034 / 0.0 unknown protein Lus10031980 [exp] 67 / 2e-11 AT5G13950 438 / 2e-138 unknown protein Lus10035121 [exp] 49 / 1e-05 AT5G13950 292 / 1e-85 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G109600 [exp] 379 / 3e-125 AT1G02290 229 / 3e-68 unknown protein Potri.002G184000 [exp] 363 / 3e-119 AT1G02290 231 / 2e-69 unknown protein Potri.009G026100 [exp] 146 / 3e-37 AT3G45830 1059 / 0.0 unknown protein Potri.001G233800 [exp] 146 / 4e-37 AT3G45830 1075 / 0.0 unknown protein Potri.014G144100 [exp] 58 / 2e-08 AT5G13950 406 / 4e-127 unknown protein Potri.002G237800 [exp] 54 / 2e-07 AT5G13950 556 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028606 pacid=23164523 polypeptide=Lus10028606 locus=Lus10028606.g ID=Lus10028606.BGIv1.0 annot-version=v1.0 ATGGGAATTCAGAAGATTAGTAATTGGAAGTCGCATTGCAGTACAGCTTCATATTTAGTCAATGGAAGTGGTGTGAAGGTCCTCAATAACCTAATTTCAG CACCAGACTTGGGAGATGATTCTGATGACGAAGAAGAGCCAATAGAGTTGAATTGCGAGATAGACACAGTAGAAGGTCATGTATGCAGTGTGCCGTATGA TCTCTATGATCTACCCGACTTGAAGGAAATATTATGTCTTGACACTTGGAATTCATGTTTGACCGAAGATGAACGGTTTGACCTGTCAGCTTATCTCCCC GACATGGACGAGCAAGCGTTTGTGTTGACGATGAAGGAGCTTTTTGATGGCAGTAACATATATTTCGGGAACCCGGTGGATATGCTCTTCAAAAGATTAA AAGGCGGGCTCTATCCTCCAACGGTGGCTCATTACAGAGAAGGTATGCAGTTTCTCCAGTGGAAAAAGCATTATAATCTGTTGAGGTCTTACCATGATAA GACGGTCCGAACTTTCGTGGAAATGAGAAGGATGTGGGATCGGTGCGAGAAGACTGTCGGTATTGAGGAACGAATGTTGTTGTGGGCCGAAAGGAGTAAA CAACACCGAGATGTCAATTTGCTTGATCTTAATAAACATCCTGGGGATGATAATAATCTAGTAAGTGAAGAAGTTCCCATGGACAGAAAGCCATTGGTGG AAGCTTTCAACATGGCCAAGTTTGTTTCTCCAAACTGCAGAGGAAAGGGTATTCTGAAGAAGAAGAAGGCATCTGGTACTGGTAATGACATCTCTAAACC GGGTCGTTCTGTACCGAAGGGCGTTCTGAAAATCGTGCCAAAGCAACCATCTGGTCAGTTGGATCAATCAGGTGGATTAAACCCAAACATGATGATCAAG TCCCAAGCTTTACGAGATGTGAAGTTCTCGGAAGCAAGTGGGATCTACAATTCACACTATATGGGGCAGAACATTCATAACAGAGTTTCCTCGCTTCTAA GCCAACCTCCATGTTTACTGAATCAGCAAGACGATATGAGAACCAGTGGCCAGTCTGGTAGCTCTATTCAGAAAATAAGAAGGGGAATTGTGCCATCGTT GCATTACAATGAGCTTCACTTTCCAATGACGTCAGTGGGTGGAAGCAGATACGTCGATAATAGAAATCTATGGTCGGAGTTAGGCCCTGAAACCAGGGAC TATTCGCTCGATTCTCTGAGATCGTTTCCCTTTGCAGTTCCGTATCACAGAGAGGATCAGTACTTGATGGCCTTGAGAGATGAACAACGTCCTGTTTATT CAACGTTTCCAGAAAGAGTTCCAGATGTTGGAAAAAGTAAGTTAGAGACTGTAGCAGGACAGCCTTCCGAAAGATTTCCGAAAGTAAAAAGTAAGGGCAG CTTGAAAATATCAGGCAATTTGATTGTTTCGGAGGGATTTACAAATGATCCTGCGCTTCCCTTGACGTACAAGCGTCGGAAGGGTCTAGCTAAAGTGAAA TCTTCGAACTTCGGCTAA
AA sequence Show only first row Show all	>Lus10028606 pacid=23164523 polypeptide=Lus10028606 locus=Lus10028606.g ID=Lus10028606.BGIv1.0 annot-version=v1.0 MGIQKISNWKSHCSTASYLVNGSGVKVLNNLISAPDLGDDSDDEEEPIELNCEIDTVEGHVCSVPYDLYDLPDLKEILCLDTWNSCLTEDERFDLSAYLP DMDEQAFVLTMKELFDGSNIYFGNPVDMLFKRLKGGLYPPTVAHYREGMQFLQWKKHYNLLRSYHDKTVRTFVEMRRMWDRCEKTVGIEERMLLWAERSK QHRDVNLLDLNKHPGDDNNLVSEEVPMDRKPLVEAFNMAKFVSPNCRGKGILKKKKASGTGNDISKPGRSVPKGVLKIVPKQPSGQLDQSGGLNPNMMIK SQALRDVKFSEASGIYNSHYMGQNIHNRVSSLLSQPPCLLNQQDDMRTSGQSGSSIQKIRRGIVPSLHYNELHFPMTSVGGSRYVDNRNLWSELGPETRD YSLDSLRSFPFAVPYHREDQYLMALRDEQRPVYSTFPERVPDVGKSKLETVAGQPSERFPKVKSKGSLKISGNLIVSEGFTNDPALPLTYKRRKGLAKVK SSNFG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02290			unknown protein		Lus10028606 [exp]	0	1
AT1G02290			unknown protein		Lus10018907 [exp]	1.0	0.8812
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10012487 [exp]	1.4	0.8588
AT3G59910			Ankyrin repeat family protein ...		Lus10010581 [exp]	4.6	0.8549
AT5G41620			unknown protein		Lus10003027 [exp]	4.8	0.7605
AT5G64210		AOX2	alternative oxidase 2 (.1)		Lus10020523 [exp]	5.3	0.8271
AT2G44200			CBF1-interacting co-repressor ...		Lus10038730 [exp]	5.5	0.8159
AT1G80400			RING/U-box superfamily protein...		Lus10023112 [exp]	5.9	0.8179
AT1G57790			F-box family protein (.1)		Lus10017027 [exp]	6.5	0.8140
AT3G51650			unknown protein		Lus10009100 [exp]	6.7	0.8084
AT5G06810			Mitochondrial transcription te...		Lus10012021 [exp]	7.2	0.7918

Compare expression of checked genes

Lus10028606 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.