Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018908 [exp] 318 / 1e-110 ND / Lus10019696 [exp] 127 / 9e-35 ND / Lus10006761 [exp] 82 / 2e-18 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028608 pacid=23164562 polypeptide=Lus10028608 locus=Lus10028608.g ID=Lus10028608.BGIv1.0 annot-version=v1.0 ATGTCGAATTCATATGAAATCCACCAGGCTGATGAAACAATGGGCGAAATGGCCCTGAATTCTTCTGATGTGCGGCCGGTGGAGCACAACCCTGTTGATG TTGAACAACTATGGTCGAAACTTACGGATCTGATGTCGGCCGCAAAAAACAATCTCAAAACAATATTGAATGAGAACTTAGCAATAACAAACAGTGCGCC CCTCAAAGCACAACCTATATCGTCGTACGGTCTACCAGCTGAAGGATCGTTCGATAGCTCGATTGTTTCTTCTGGAAAAAGAAAGTTGAAGCAACCTTGT ATAACAACTGGAAGATATGCTTTGCCTTTAAATCTCCCTCAAGATTTTATAGAAAATCTTCCAAAAATTGAAGAGATTACCGACAAGATGTGGTTACAGG TCCTGAAGTTATCCAACAAGATGGTACAAGGTGGCCAACTGTCTTTGGCACAAAAGCTCCAAGGCTGGACCATTGAGGTCAGACGTCGAGCAGGTGGCGA ATATGATACGTACTTCAACCATGAGGGCATAGCTTGGGAGTTCCGCTCGATAACAGGGGTAAACAAGTACATATTATATAATGATCTGGAAACGAGAAGT GCAAAGAAGAAAGGAAATGAAACCAGAGAGAACAAAAAGGCTAGACGAGTGGTTAGCGAGGTGGATGGTAAGAAAATGGTGGAAGATTTCCTCAGAGAAT CGTACGACAATTTTCTGCACTATCGAGGAGACCCAGCTTACTATACCTCTGTGTGA
AA sequence Show only first row Show all	>Lus10028608 pacid=23164562 polypeptide=Lus10028608 locus=Lus10028608.g ID=Lus10028608.BGIv1.0 annot-version=v1.0 MSNSYEIHQADETMGEMALNSSDVRPVEHNPVDVEQLWSKLTDLMSAAKNNLKTILNENLAITNSAPLKAQPISSYGLPAEGSFDSSIVSSGKRKLKQPC ITTGRYALPLNLPQDFIENLPKIEEITDKMWLQVLKLSNKMVQGGQLSLAQKLQGWTIEVRRRAGGEYDTYFNHEGIAWEFRSITGVNKYILYNDLETRS AKKKGNETRENKKARRVVSEVDGKKMVEDFLRESYDNFLHYRGDPAYYTSV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10028608 [exp]	0	1
AT1G61105			Toll-Interleukin-Resistance (T...		Lus10011216 [exp]	5.7	0.7018
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004181 [exp]	6.9	0.6983
AT1G32730			unknown protein		Lus10000258 [exp]	11.3	0.6844
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10010873 [exp]	11.4	0.6873
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10008843 [exp]	12.4	0.6536
					Lus10003370 [exp]	14.7	0.6527
AT1G17930			Aminotransferase-like, plant m...		Lus10023395 [exp]	15.9	0.5899
AT3G05610			Plant invertase/pectin methyle...		Lus10020681 [exp]	19.3	0.6523
AT3G05950			RmlC-like cupins superfamily p...		Lus10023351 [exp]	25.1	0.6323
AT2G31750		UGT74D1	UDP-glucosyl transferase 74D1 ...		Lus10009409 [exp]	26.3	0.6323

Compare expression of checked genes

Lus10028608 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.