Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80380 188 / 1e-57 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018910 [exp] 144 / 4e-41 AT1G80380 469 / 6e-168 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G058500 [exp] 217 / 1e-67 AT1G80380 600 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Potri.001G177300 [exp] 209 / 3e-65 AT1G80380 573 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028609 pacid=23164552 polypeptide=Lus10028609 locus=Lus10028609.g ID=Lus10028609.BGIv1.0 annot-version=v1.0 ATGGCGGGTTTGAACGCGGCATCGCCACTCTGCTGCAGCTTCTCTTCCAAACTCCACGCCCACCATGACTGTGATAATTACAACACCTTATCTATCGAGA TTAATAGCCGAAGTAACAACAACTACCCTTGTTCGTATCATCACTGTTCTTCGTCTCCTTCCAATTCGTCAGTCTCCAGGTCTTTCAAGCCTTCTCGGAT CCATACCCATATCTCCAAATCAGGTTTTAAGAATTCATCATGGAGAATAGGTTCATCCATTGACTCAGCTTTCCCATCAGCTCCTGCAAAAGTTGCTGCT GTCGAAAACCTCTACGAGTTCATATGCTCGGGTCCTCTTGTAGCCAAGATAGGTTTGAGTTCCGAGATGATTGCTGAGTCTATCGATAAATGGATTCTGT ACGGATCGCTCTTGTGCCGTTTGTTTCAGCTCAACGACATGTACCTCACTGAACCTCAGAAGGCGAGGTTCTACCACTACTACATCCCGGTCTTCATTTG GTGCGAAAACCAGATTTCGAAGCACGTTTCTCAGTTCAAAGATGGAGATGAAGTCACTCCTCTAGTGATTGGTTTCAGTGCACCTCAAGGCTGTGGAAAG ACTACTCTTGTATCTGCCCTTGCTCATCTCTTTGATGCAGAAATTGCAATGAGGGAAGCAGGCAAACCTGGGATGACTGATGAGGAGGTGAAAGACTTTG TTTCAAGGTATCTGCCAGCATACAAAGCATATCTACCAACACTATATGCAGAAGGGCCAAAAGGGTCAATTCCTGAGAATCTACTAGTGATTGAAATTGA TGAAGGAAGGAACCCTATTCTGGAGAACTAA
AA sequence Show only first row Show all	>Lus10028609 pacid=23164552 polypeptide=Lus10028609 locus=Lus10028609.g ID=Lus10028609.BGIv1.0 annot-version=v1.0 MAGLNAASPLCCSFSSKLHAHHDCDNYNTLSIEINSRSNNNYPCSYHHCSSSPSNSSVSRSFKPSRIHTHISKSGFKNSSWRIGSSIDSAFPSAPAKVAA VENLYEFICSGPLVAKIGLSSEMIAESIDKWILYGSLLCRLFQLNDMYLTEPQKARFYHYYIPVFIWCENQISKHVSQFKDGDEVTPLVIGFSAPQGCGK TTLVSALAHLFDAEIAMREAGKPGMTDEEVKDFVSRYLPAYKAYLPTLYAEGPKGSIPENLLVIEIDEGRNPILEN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80380			P-loop containing nucleoside t...		Lus10028609 [exp]	0	1
AT5G27560			Domain of unknown function (DU...		Lus10029915 [exp]	3.3	0.9326
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10033538 [exp]	4.9	0.9101
AT3G24430		HCF101	HIGH-CHLOROPHYLL-FLUORESCENCE ...		Lus10019395 [exp]	9.6	0.9249
AT1G80380			P-loop containing nucleoside t...		Lus10018910 [exp]	9.9	0.9064
AT5G21430		NdhU, CRRL	NADH dehydrogenase-like comple...		Lus10027616 [exp]	12.6	0.9177
AT5G26820		RTS3, MAR1, ATI...	MULTIPLE ANTIBIOTIC RESISTANCE...		Lus10020698 [exp]	13.4	0.9147
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10013642 [exp]	13.9	0.9212
AT3G05410			Photosystem II reaction center...		Lus10029903 [exp]	15.6	0.9093
AT5G53850			haloacid dehalogenase-like hyd...		Lus10005542 [exp]	15.8	0.9080
AT1G32470			Single hybrid motif superfamil...		Lus10035374 [exp]	16.1	0.9144

Compare expression of checked genes

Lus10028609 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.