Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52440 117 / 3e-32 DOF AtDof3,5 Dof-type zinc finger DNA-binding family protein (.1) AT1G21340 117 / 8e-32 DOF AtDof1,2 Dof-type zinc finger DNA-binding family protein (.1) AT4G24060 110 / 1e-28 DOF AtDof4,6 Dof-type zinc finger DNA-binding family protein (.1) AT2G28510 106 / 1e-27 DOF AtDof2,1 Dof-type zinc finger DNA-binding family protein (.1) AT3G61850 105 / 2e-27 DOF DAG1, AtDof3,7 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) AT1G07640 105 / 3e-27 DOF OBP2, AtDof1. 1 Dof-type zinc finger DNA-binding family protein (.1.2.3) AT5G60200 105 / 3e-27 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT2G46590 106 / 6e-27 DOF DAG2, AtDof2,5 DOF AFFECTING GERMINATION 2, Dof-type zinc finger DNA-binding family protein (.1.2) AT5G65590 105 / 6e-27 DOF AtDof5,7 Dof-type zinc finger DNA-binding family protein (.1) AT1G64620 105 / 8e-27 DOF AtDof1,8 Dof-type zinc finger DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029767 [exp] 139 / 4e-40 AT3G52440 145 / 2e-42 Dof-type zinc finger DNA-binding family protein (.1) Lus10013586 [exp] 112 / 2e-29 AT3G52440 137 / 5e-39 Dof-type zinc finger DNA-binding family protein (.1) Lus10025340 [exp] 110 / 5e-28 AT2G37590 182 / 4e-54 DNA binding with one finger 2.4 (.1) Lus10042114 [exp] 100 / 3e-27 AT5G62940 149 / 7e-45 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10016566 [exp] 105 / 8e-27 AT3G55370 160 / 2e-46 OBF-binding protein 3 (.1.2.3) Lus10015425 [exp] 104 / 9e-27 AT5G60200 129 / 8e-36 TARGET OF MONOPTEROS 6 (.1) Lus10002381 [exp] 105 / 1e-26 AT5G62940 166 / 4e-48 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10034652 [exp] 103 / 2e-26 AT5G60850 162 / 4e-48 OBF binding protein 4 (.1) Lus10014002 [exp] 101 / 2e-26 AT5G60200 124 / 7e-35 TARGET OF MONOPTEROS 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G188900 [exp] 126 / 6e-35 AT1G21340 140 / 5e-40 Dof-type zinc finger DNA-binding family protein (.1) Potri.002G070700 [exp] 122 / 2e-33 AT1G21340 151 / 3e-44 Dof-type zinc finger DNA-binding family protein (.1) Potri.016G069300 [exp] 115 / 7e-31 AT3G52440 167 / 7e-51 Dof-type zinc finger DNA-binding family protein (.1) Potri.006G202500 [exp] 113 / 4e-30 AT3G52440 176 / 3e-54 Dof-type zinc finger DNA-binding family protein (.1) Potri.003G144500 [exp] 110 / 2e-29 AT4G24060 201 / 1e-62 Dof-type zinc finger DNA-binding family protein (.1) Potri.015G009300 [exp] 110 / 3e-29 AT4G24060 154 / 1e-44 Dof-type zinc finger DNA-binding family protein (.1) Potri.012G018700 [exp] 110 / 6e-29 AT3G61850 141 / 9e-40 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.001G086400 [exp] 107 / 5e-28 AT4G24060 176 / 5e-53 Dof-type zinc finger DNA-binding family protein (.1) Potri.006G084200 [exp] 107 / 2e-27 AT2G37590 160 / 2e-46 DNA binding with one finger 2.4 (.1) Potri.001G238400 [exp] 107 / 2e-27 AT3G55370 160 / 9e-47 OBF-binding protein 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [flax] [poplar] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Lus10028611 pacid=23164597 polypeptide=Lus10028611 locus=Lus10028611.g ID=Lus10028611.BGIv1.0 annot-version=v1.0 ATGTTTCACTCTGTTTGCTCCTCCGGCGAGGTGAGGCCGGAGACATTGGCCTCGCTGCAGGGGAGCAGACCCCACTTAGAAACCGCGCCCAATTGCCCGC GGTGCGCATCTTCCAACACCAAGTTCTGCTACTACAATAATTATAGTCTCTCCCAGCCTCGTTACTTTTGCAAAGGCTGTCGCCGCTACTGGACCCGCGG CGGCTCCCTCCGCAACGTCCCTGTCGGAGGCGGATGCCGCCGCCGCAAGTCCCGACGCTCCTCCCGCACTGCCGCGGCTGCTCCGCCGCTGCCGCCCGTG GAGGCGGCTGCGACGGACCTGAGAAGAGCGGATATCGACATGGCGGATGTGTTTGCCAAGTTCCTGAACCCAGAATCGGTTTCGAATTCTAGCTCGTCTA TGGCTTCGACGCCGGAGAGCGGCGGGACTCTATTTTTGGCTACGGCGGGAGAGGAGGCGGAGTACGAGTTGATGGCGGATTTGTTTCGAGAAGAGGGGTT TCCGGAAGAGCAGAGCCTGGAGATGATTAATGTGACATTGTTGAGCGAGGAAATGGCTGAGCTTGAAGCGGCGCTTTGGTCGACGACGACGGTGGATACT GATCATCAAGTTACAATGCCGTCGCCACTAGGGTTTGATTCAGGAGATTTTGGGGTTAGTATTGGTAATTCGGATTGTTTCGATCTCCCACTCTAG
AA sequence Show only first row Show all	>Lus10028611 pacid=23164597 polypeptide=Lus10028611 locus=Lus10028611.g ID=Lus10028611.BGIv1.0 annot-version=v1.0 MFHSVCSSGEVRPETLASLQGSRPHLETAPNCPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTRGGSLRNVPVGGGCRRRKSRRSSRTAAAAPPLPPV EAAATDLRRADIDMADVFAKFLNPESVSNSSSSMASTPESGGTLFLATAGEEAEYELMADLFREEGFPEEQSLEMINVTLLSEEMAELEAALWSTTTVDT DHQVTMPSPLGFDSGDFGVSIGNSDCFDLPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21340	DOF	AtDof1,2	Dof-type zinc finger DNA-bindi...		Lus10028611 [exp]	0	1
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10001637 [exp]	11.3	0.9275
AT1G53130		GRI	GRIM REAPER, Stigma-specific S...		Lus10005544 [exp]	15.5	0.9240
AT1G62770			Plant invertase/pectin methyle...		Lus10032230 [exp]	17.5	0.9179
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10001429 [exp]	20.3	0.9238
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10038959 [exp]	22.3	0.9187
AT2G24400			SAUR-like auxin-responsive pro...		Lus10035716 [exp]	26.3	0.9167
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10011052 [exp]	26.8	0.9170
AT2G44380			Cysteine/Histidine-rich C1 dom...		Lus10003919 [exp]	31.4	0.9120
AT2G45570		CYP76C2	"cytochrome P450, family 76, s...		Lus10027426 [exp]	35.0	0.9116
AT1G31710			Copper amine oxidase family pr...		Lus10013355 [exp]	41.7	0.9075

Compare expression of checked genes

Lus10028611 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.