Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24240 941 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G48940 918 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G56040 806 / 0 Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G26540 784 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G34110 722 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 550 / 9e-178 Leucine-rich repeat protein kinase family protein (.1) AT5G61480 548 / 1e-177 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT2G33170 530 / 9e-170 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G17230 528 / 3e-169 Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 525 / 1e-166 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018911 [exp] 1858 / 0 AT3G24240 1033 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10011756 [exp] 909 / 0 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10023677 [exp] 869 / 0 AT5G48940 1361 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10032954 [exp] 801 / 0 AT5G56040 1399 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10000509 [exp] 728 / 0 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10017782 [exp] 724 / 0 AT1G34110 1467 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10027221 [exp] 552 / 3e-179 AT5G61480 1263 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10038930 [exp] 543 / 1e-175 AT5G61480 1248 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10006028 [exp] 505 / 3e-161 AT5G25930 1116 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G188700 [exp] 1256 / 0 AT5G48940 1011 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.002G070900 [exp] 1246 / 0 AT3G24240 1004 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.003G175700 [exp] 909 / 0 AT3G24240 1374 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G052500 [exp] 899 / 0 AT3G24240 1367 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G467300 [exp] 845 / 0 AT4G26540 1347 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.011G164800 [exp] 838 / 0 AT5G56040 1435 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.015G080800 [exp] 811 / 0 AT5G56040 1019 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.012G088100 [exp] 810 / 0 AT5G56040 1005 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.005G198000 [exp] 739 / 0 AT1G34110 1381 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G063300 [exp] 716 / 0 AT1G34110 1400 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10028612 pacid=23164633 polypeptide=Lus10028612 locus=Lus10028612.g ID=Lus10028612.BGIv1.0 annot-version=v1.0 ATGCCTAGAAGAAATGCAACGATCATAACAACTCTGTTCATCTTCTTCTTCTTCTTCACAGCAAATTCCTTGAACCAAGAAGGCCTCTCATTACTCTCAT GGCTATCAACATTCAACTCATCATCGACATCATCCTCATCGTCGATCGCGTTCTCTTCATGGGATCAGAGCCACCCGACGCCTTGCAAATGGGAGTTCGT AACATGCTCGAACGATGGGTTTGTAACGGAAATCATAATCTCTTCCATAAATCTCCCCACCACTTTCCCAACTCAGATCCTCTCCTTCACCAGGCTGACA ACTCTGGTCCTCTCGAGATCGAACCTGACCGGTTCGATCCCCAGTTCGATCTCGAATCTTTCGTCGACTCTGGTGGAGTTGGACCTCAGTTTCAACTCGT TGACAGGAGGAATTCCTGCAGAGATTGGGCGGATGGGTAATCTTCAGGGTCTGTCGCTGAATTCGAATTTCTTGGAGGGCAAGATTCCTGGAGAGATTGG AAATGTTTCCAAGCTGAGGAAGCTTGAGCTTTACGATAACCGAATCAGTGGGAAGATTCCTTCTGAGATTGGGAAATTAGGGTATCTGGAGAAGTTCCGA GCTGGCGGGAACTTGGGAATTTTGGGAGAGATTCCATCAGAGATTTCAAACTGCAGGAGCTTGGTTTTCTTGGGTTTGGCGGATACAGGTATTTCAGGTC GAATACCGGCCGGTTTCGGTCGGTTGAAGAATCTGAAGGTTCTTTCGGTGTACACTGCGAAATTGACCGGTGGGATTCCTTCCGAGTTGGGCAATTGTTC AGAATTGGAAAGTTTGTTCCTTTATCAGAACCAGCTCGCGGGAGAGATCCCTCGCGAACTCGGTTGTTTGAGGAAGTTAAGACGGTTGCTCCTCTGGCAG AACAATCTGACTGGTTCGATTCCAGAGGTTCTCGGCAATGTCTCAGGTTTGGAAGTGATGGATCTTTCTATTAATTCTTTTTCAGGAATGATTCCTTCTT CTTTTGCCAATTTAGTTTGGCTGTCCGAGTTTCTCCTGTCGGAGAATTGGTTTTCAGGAACAATTCCTGAGTTTATCGGAAACTTCTCGGGGTTGAAACA ACTCGAACTCGACAATAATAAGTTCACTGGGGAAGTTCCTGACAGTATAGGAAAGCTGACTGAGCTCTCATTGTTCTATGCATGGAACAATCAGCTTTCA GGAAGGATTCCTGAAAACCTCGGGAAATGCTGGAATCTCGAAGCATTGGATCTTTCGCACAACTTCCTAACCGGTCCAGTCCCCAAATCACTATTTCAAC TCAAGAACCTGACTCAGCTTCTCCTGATATCAAATAAGCTGTCAGGTGAGATCCCACCGAATATTGGAAGCTGCCATGGCTTGATCCGGTTACGACTCGG ATCGAACAACTTCACCGGAGAAATCCCGCCCGAAATTGGAATCCTGAAGAACTTGAGCTTCCTCGAGCTGTCTCGCAACAACTTTAGCGGGCAGATTCCT CAGGAGATTGGCAACTGCACTCAGCTGGAGATGGTCGACTTGCACGAGAACACAATCCACGGCGTACTTCCTGAAACCTTCGAGTTTCTCTTGAAGCTGA ACGTTCTAGACCTGTCGTGGAACAGGATCTCGGGTCGAATCCCACAGAAAATTGGAAAGCTGGCATCTTTGAACAAGCTGATGCTCGGTGGGAACTATAT CTCTGGTGGGATTCCTTACTCGCTCGGATTCTGTAAAGATCTTCAGCTTTTGGACCTGAGCAGAAACAGGATCGAGGGCTCGATCCCATATGAGATTGGA CAGCTAGAACAGCTTGACATCCTGCTCAACCTGAGCTGGAACCTGTTAACCGGTCCGATTCCTGACAGCCTCTCGAATCTGTCAAAGCTCTCAACTTTGG ACATCTCTCACAACATCCTGACAGGATCTTTGACAGTACTAGGTAGGCTTGAGAATCTTGTGTCCTTAAATGTATCTTTCAACAGATTCTCAGGATCTTT ACCCAACACCAAGTTCTTCCAGGATCTTCCTCCGTCGTGCTATTCAGGCAACACGGATCTCTGCATTGGAGGATCCAACGACGATTGTTTAAACAATCGA AATGGGTCACACGGATCGAAAAATTCGACAAGGAATCTCGTCATATGGGTTCTCCTAAGCCTATTCATCACATTGCTGATCGTAGTGTCAGGATTCATCC TGTTTGTCAGAATCCACAGCCCTAATTCGTGTAACCACGAAGATGTCGATCAGGAATCCTCGATCGAGAACTGGGACTTCACTCCGTTCCAGAAGCTCAA CTTCTCGCTACACGACATAGTCACAAGCCTCTCGGATGCGAATGTGGTCGGAAAAGGCGGTTCAGGAATGGTGTACCGAGTTCAGACATCGACCAATCAG GTCGTGGCTGTGAAAAAACTGTGGCCTCAACCTCTCAGGAATTCTGACCCCACTCAGAGGGATTTCTTCTCGGCCGAGGTTCGAGCATTGGGGTCCATAA GGCACAAGAACATCGTCAGGCTTCTAGGATGTTGCAAGAATGGGAAAACTCGGTTGCTTCTGTTTGACTACATAAGCCATGGGAGCTTGTCAGGATTGCT ACATGAAAAGGACGAATTCCTCCTCGACTGGGAAGCAAGGTACAGGATTCTGTTGGGGGCAGCTCATGGCTTGGCTTACCTTCACCATGATTGTACTCCT CCGATTGTTCATCGCGATGTCAAGGCCAATAACATACTTGTAGGGCAGCATTTCGAAGCCTTCCTTGCTGATTTTGGGATCGCAAAGCTCATTGATTCTT CTGCGGAGTGTTCCGCCGGTGTTTCCAACTCTGTTGCTGGCTCTTATGGATACATTGCTCCTGAGTACGGATACAGTCTACGAATCACGGAGAAGAGCGA CGTGTACAGCTACGGAGTGGTGCTCCTCGAGATCCTGACAGGAAAGCAACCGACCGACCCTCAAATTCCCGAAGGCGCGGGCCACATTGTGAGCTGGGTC AACAGAGAGCTGAGGGAGAAAAGAAGAGAGTTCACAACAGTACTGGACCAGCAATTAGTGACAAGATCAGGGACCCAACTGCAAGAAATGGTCCAAGTTC TTGGAGTTGCTCTGCTCTGTGTCAACACTTCTCCTAATGAAAGACCCACCATGAAGGACGTTGTTGCAATGCTCAAAGAGATCAAGGACTCGAACAGCAA TGATACAGATTCTGAGAAAAGTAGTACTGCTGGGAAAAGATTGGTTAAGCAGTGTTCTAGCTTTTCTAGGTCTTCTGAGCCTTTGATAAGGTCACCTTGA
AA sequence Show only first row Show all	>Lus10028612 pacid=23164633 polypeptide=Lus10028612 locus=Lus10028612.g ID=Lus10028612.BGIv1.0 annot-version=v1.0 MPRRNATIITTLFIFFFFFTANSLNQEGLSLLSWLSTFNSSSTSSSSSIAFSSWDQSHPTPCKWEFVTCSNDGFVTEIIISSINLPTTFPTQILSFTRLT TLVLSRSNLTGSIPSSISNLSSTLVELDLSFNSLTGGIPAEIGRMGNLQGLSLNSNFLEGKIPGEIGNVSKLRKLELYDNRISGKIPSEIGKLGYLEKFR AGGNLGILGEIPSEISNCRSLVFLGLADTGISGRIPAGFGRLKNLKVLSVYTAKLTGGIPSELGNCSELESLFLYQNQLAGEIPRELGCLRKLRRLLLWQ NNLTGSIPEVLGNVSGLEVMDLSINSFSGMIPSSFANLVWLSEFLLSENWFSGTIPEFIGNFSGLKQLELDNNKFTGEVPDSIGKLTELSLFYAWNNQLS GRIPENLGKCWNLEALDLSHNFLTGPVPKSLFQLKNLTQLLLISNKLSGEIPPNIGSCHGLIRLRLGSNNFTGEIPPEIGILKNLSFLELSRNNFSGQIP QEIGNCTQLEMVDLHENTIHGVLPETFEFLLKLNVLDLSWNRISGRIPQKIGKLASLNKLMLGGNYISGGIPYSLGFCKDLQLLDLSRNRIEGSIPYEIG QLEQLDILLNLSWNLLTGPIPDSLSNLSKLSTLDISHNILTGSLTVLGRLENLVSLNVSFNRFSGSLPNTKFFQDLPPSCYSGNTDLCIGGSNDDCLNNR NGSHGSKNSTRNLVIWVLLSLFITLLIVVSGFILFVRIHSPNSCNHEDVDQESSIENWDFTPFQKLNFSLHDIVTSLSDANVVGKGGSGMVYRVQTSTNQ VVAVKKLWPQPLRNSDPTQRDFFSAEVRALGSIRHKNIVRLLGCCKNGKTRLLLFDYISHGSLSGLLHEKDEFLLDWEARYRILLGAAHGLAYLHHDCTP PIVHRDVKANNILVGQHFEAFLADFGIAKLIDSSAECSAGVSNSVAGSYGYIAPEYGYSLRITEKSDVYSYGVVLLEILTGKQPTDPQIPEGAGHIVSWV NRELREKRREFTTVLDQQLVTRSGTQLQEMVQVLGVALLCVNTSPNERPTMKDVVAMLKEIKDSNSNDTDSEKSSTAGKRLVKQCSSFSRSSEPLIRSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48940			Leucine-rich repeat transmembr...		Lus10028612 [exp]	0	1
AT3G24240			Leucine-rich repeat receptor-l...		Lus10018911 [exp]	1.0	0.9932
AT2G15080		AtRLP19	receptor like protein 19 (.1.2...		Lus10039512 [exp]	1.4	0.9236
AT3G63340			Protein phosphatase 2C family ...		Lus10014699 [exp]	3.2	0.9103
AT1G28240			Protein of unknown function (D...		Lus10011175 [exp]	3.7	0.8921
AT4G36870	HD	BLH2, SAW1	SAWTOOTH 1, BEL1-like homeodom...		Lus10022485 [exp]	3.9	0.9165
AT3G01510		LSF1	like SEX4 1 (.1)		Lus10022236 [exp]	4.5	0.9132
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10007975 [exp]	7.7	0.9012
AT2G45670			calcineurin B subunit-related ...		Lus10009312 [exp]	8.7	0.8705
AT3G51150			ATP binding microtubule motor ...		Lus10025969 [exp]	9.5	0.8867
AT1G13970			Protein of unknown function (D...		Lus10036799 [exp]	11.8	0.8782

Compare expression of checked genes

Lus10028612 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.