Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G11520 495 / 1e-171 CRCK3 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) AT5G58940 347 / 4e-114 CRCK1 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) AT4G00330 343 / 1e-113 CRCK2 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) AT3G46290 238 / 3e-69 HERK1 hercules receptor kinase 1 (.1) AT4G39110 238 / 5e-69 Malectin/receptor-like protein kinase family protein (.1) AT2G21480 238 / 5e-69 Malectin/receptor-like protein kinase family protein (.1) AT5G54380 237 / 1e-68 THE1 THESEUS1, protein kinase family protein (.1) AT1G10620 233 / 5e-68 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT5G59700 234 / 7e-68 Protein kinase superfamily protein (.1) AT5G38990 231 / 2e-66 Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018913 [exp] 892 / 0 AT2G11520 520 / 0.0 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10041796 [exp] 567 / 0 AT2G11520 498 / 2e-175 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10028347 [exp] 493 / 4e-171 AT2G11520 435 / 3e-149 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10036376 [exp] 348 / 2e-115 AT4G00330 474 / 1e-166 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10018828 [exp] 345 / 4e-114 AT4G00330 471 / 2e-165 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10017787 [exp] 343 / 9e-112 AT4G00330 471 / 1e-163 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10040704 [exp] 323 / 5e-105 AT5G58940 418 / 3e-143 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) Lus10014760 [exp] 334 / 7e-103 AT4G00350 703 / 0.0 MATE efflux family protein (.1) Lus10018203 [exp] 323 / 1e-99 AT3G46980 689 / 0.0 phosphate transporter 4;3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G064200 [exp] 600 / 0 AT2G11520 508 / 2e-177 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Potri.018G124600 [exp] 592 / 0 AT2G11520 502 / 6e-175 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Potri.014G087200 [exp] 351 / 2e-116 AT4G00330 488 / 7e-172 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Potri.002G161600 [exp] 342 / 8e-113 AT4G00330 479 / 2e-168 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Potri.009G041900 [exp] 337 / 1e-110 AT5G58940 412 / 3e-141 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) Potri.017G096400 [exp] 246 / 1e-75 AT3G51550 451 / 6e-151 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.009G026600 [exp] 243 / 3e-71 AT3G46290 1093 / 0.0 hercules receptor kinase 1 (.1) Potri.006G114400 [exp] 243 / 3e-70 AT1G79620 1295 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G095900 [exp] 242 / 3e-70 AT3G51550 845 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.009G120400 [exp] 241 / 3e-70 AT4G39110 1210 / 0.0 Malectin/receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10028613 pacid=23164517 polypeptide=Lus10028613 locus=Lus10028613.g ID=Lus10028613.BGIv1.0 annot-version=v1.0 ATGGATATAGAGCAAATCACTTCAATAAGAATAGTGGAGTTTTTCTTCACAGTTACCTTACTGTTAGCTTCACGATTGCCTCGGAATCTTGCCTCTGGAT GTGAGAAACAGTTGAGGGTTTGCGGTGCTGATCGAGTCGAGTTTTCGGATGCTTTGGATGTTCAATTCATTCTCATCAATGGGAATGTTGTAGATGAAGA TTCGTTATGTGAGGCTCTCCGTTTTCACGCTTCCACCGGCTGCATCTCTGCTCAAGAGTATGAAGGGATCCACTGCAGATTGGAATCTTTATCAGCTAAC TTACATCCCAAGAAATCAAGGAAACTTCTGCAGAAAGAGATTCAGGATGGTGAGGATAGTGCACCGGACCACCAGCCAAAAGATTCCGATTCTATTTCCA CAAAGCACGTAGGAGTAATAGCAGCCGGAATCGTTGCAATGTGTTGTGGTGTGCTATGCCCTTGTTTTTACAAGAGAAGGAGAGCAACTTCTCACACTGT TCTTTCCAAGGATTTGGTTTCAATGGATTCTGTTTCTTCAATGGGTTCTCCTTCGCCTTCTATGCATGGTAAAGTGCCTCCTAGTCCGCTCCGTGTGCCC CCTAGTCCTTCTAGGTTCGCAGCCTCCCCGAAACTTTCTAGACTCGGTTCTGTTCATGTCAACTTGGGTCAAGTTGCGCGAGCTACTCGTAATTTCTCTT CGTCTTTGAGACTCGGTGAAGGAGGGTTTGGAACTGTGTATAAAGCTTACTTAGATGATGGGCAGATCGTAGCCATAAAGCGAGCCAAAAAGGAAACCTT TGAGAACTTACGAACAGAATTCAGCAGCGAAGTCGAACTGCTAGCAAAGATCGATCACCGAAATTTAGTGAAGTTACTTGGCTATGTCGACACAGGAAAC GAACGCCTTCTCATAACGGAGTATGTAGCGAATGGTACTCTCAGAGAACACTTGGATGGTCAACGTGGGAAAATTCTCGACTTCAACCAACGACTCGAGA TAGCCATTGACGTTGCTCATGCTCTTACTTATCTCCATATATACGCAGAGAAACAAATCATTCACCGAGACGTGAAGTCATCGAACATTCTTCTGACCGA GAGCATGAGAGCTAAGGTTGCTGATTTCGGGTTCGCAAGGTTGGGTAATGTGGACTCTGAGCAAACTCACATCTCGACGAAAGTGAAGGGAACAGTTGGT TACCTTGACCCTGAATACATGAAGACATATCAACTCACCCCCAAGAGCGACGTGTACTCCTTCGGGATACTGCTGTTGGAAATTCTGACCGGGCGTCGAC CTGTGGAGATAAAGAGACCTCCTGCTGAACGGGTGACTCTAAGATGGGCGTTCCAGAAGTACAATGAGTATGCGGTGGCGGAGATGGTGGATCCATTGAT GGAAGAAGCAGTGGGAGGAGCTATACTGAGAAAGATGACGAATTTGGCGATCAGATGTGCAGCACCGGTTAGAATTGATCGACCTGATATGAAAGCTGTA GGGGAAGAGCTGTGGGGGATAAGATCTGACTACCTCAAGAGCACAAAGCTGAAGATGGCACAACAAGTACAGCTACAACAACTTCATGTGGTACAACAAG ACTCAAAAGTTGTCTCTTCCGCCTTGTAA
AA sequence Show only first row Show all	>Lus10028613 pacid=23164517 polypeptide=Lus10028613 locus=Lus10028613.g ID=Lus10028613.BGIv1.0 annot-version=v1.0 MDIEQITSIRIVEFFFTVTLLLASRLPRNLASGCEKQLRVCGADRVEFSDALDVQFILINGNVVDEDSLCEALRFHASTGCISAQEYEGIHCRLESLSAN LHPKKSRKLLQKEIQDGEDSAPDHQPKDSDSISTKHVGVIAAGIVAMCCGVLCPCFYKRRRATSHTVLSKDLVSMDSVSSMGSPSPSMHGKVPPSPLRVP PSPSRFAASPKLSRLGSVHVNLGQVARATRNFSSSLRLGEGGFGTVYKAYLDDGQIVAIKRAKKETFENLRTEFSSEVELLAKIDHRNLVKLLGYVDTGN ERLLITEYVANGTLREHLDGQRGKILDFNQRLEIAIDVAHALTYLHIYAEKQIIHRDVKSSNILLTESMRAKVADFGFARLGNVDSEQTHISTKVKGTVG YLDPEYMKTYQLTPKSDVYSFGILLLEILTGRRPVEIKRPPAERVTLRWAFQKYNEYAVAEMVDPLMEEAVGGAILRKMTNLAIRCAAPVRIDRPDMKAV GEELWGIRSDYLKSTKLKMAQQVQLQQLHVVQQDSKVVSSAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Lus10028613 [exp]	0	1
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Lus10018913 [exp]	1.0	0.9273
AT3G51830		ATG5, SAC8	SAC domain-containing protein ...		Lus10009080 [exp]	2.4	0.9250
AT1G11340			S-locus lectin protein kinase ...		Lus10013910 [exp]	11.6	0.9136
AT5G49760			Leucine-rich repeat protein ki...		Lus10007587 [exp]	14.1	0.9134
AT1G03590			Protein phosphatase 2C family ...		Lus10033708 [exp]	14.7	0.9170
AT3G57530		ATCPK32, CDPK32...	calcium-dependent protein kina...		Lus10026742 [exp]	15.8	0.9232
AT1G04985			unknown protein		Lus10015157 [exp]	20.9	0.8720
AT4G21920			unknown protein		Lus10006774 [exp]	27.9	0.8974
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10041897 [exp]	29.7	0.8814
AT5G49760			Leucine-rich repeat protein ki...		Lus10012159 [exp]	31.9	0.8654

Compare expression of checked genes

Lus10028613 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.