Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71890 570 / 0 SUC5, ATSUC5 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) AT1G66570 558 / 0 ATSUC7 sucrose-proton symporter 7 (.1.2.3) AT1G22710 553 / 0 SUT1, ATSUC2, SUC2 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) AT1G71880 551 / 0 ATSUC1, SUC1 ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 1, sucrose-proton symporter 1 (.1) AT2G14670 551 / 0 ATSUC8 sucrose-proton symporter 8 (.1) AT5G43610 545 / 0 ATSUC6 sucrose-proton symporter 6 (.1) AT5G06170 543 / 0 ATSUC9 sucrose-proton symporter 9 (.1) AT1G09960 437 / 2e-149 ATSUC4, SUC4, ATSUT4, SUT4 sucrose transporter 4 (.1) AT2G02860 367 / 1e-120 ATSUT2, ATSUC3, SUT2 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018914 [exp] 919 / 0 AT1G71890 593 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10029766 [exp] 658 / 0 AT1G22710 655 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10028616 [exp] 598 / 0 AT1G71890 617 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10018915 [exp] 591 / 0 AT1G71890 616 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10017910 [exp] 578 / 0 AT1G71890 693 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10007702 [exp] 501 / 1e-174 AT1G22710 588 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10014821 [exp] 436 / 2e-150 AT1G71890 532 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10032815 [exp] 436 / 1e-148 AT1G09960 694 / 0.0 sucrose transporter 4 (.1) Lus10009428 [exp] 356 / 2e-119 AT1G22710 471 / 1e-164 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G115200 [exp] 571 / 0 AT1G22710 643 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.019G085800 [exp] 559 / 0 AT1G22710 645 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.002G106900 [exp] 424 / 5e-144 AT1G09960 674 / 0.0 sucrose transporter 4 (.1) Potri.010G093600 [exp] 240 / 5e-72 AT2G02860 816 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) Potri.008G148100 [exp] 232 / 6e-69 AT2G02860 849 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028614 pacid=23164521 polypeptide=Lus10028614 locus=Lus10028614.g ID=Lus10028614.BGIv1.0 annot-version=v1.0 ATGAACGAACAGTCGCCGCCGGATGAGTCACAAAAGAAGCCTTTCATGAACAGATTGAAAGGATTGTATGCGTACCGCAAGTTAATCCTCGTGGCGGCGA TCGCGATCGGTCTCCAATTCGGGTGGGCCCTTCAACTATCGTTACTTACTCCTTACGTTCAACTCCTGGGGATCCCACACGCTTATGCCGGCTTCATCTG GCTGTGTGGGCCCATTTCCGGATTAATTGTACAACCGTTAGTCGGCTATTATAGCGACAGGTGCACCTCCCGCTTTGGCCGCCGCCGCCCCTTCATCGGG ACCGGCGTCGCATTGGTGGCCGTCTCCGTCTTACTCATCGGATACGCCGCCGATATCGGTCATACCGCCGGCGACGACCTCTCTAAAGAAATGAAGCCAC GTGCCATCACGATCTTCGTCCTCGGGTTCTGGATCCTCGACGTCTCCAACAACGTGCTGATGGGGCCATGCCGCGCCCTCCTCGCCGATCTTTCCGGGTC TGATCATAAGAAGACACGTGTCGCCAACTCATTTTTCGCGTTCTTCGTTGCCATCGGTAACGTCCTCGGTTACGCTGCCGGCTCCTTCAACGACATCCAC AAGGTGTTCCCCTTCACGAAGACAAAAGCGTGCAATGTATTCTGCGCGAATCTGAAATCTTGCTTCTTCATCTCCGCGGCGCTGATTATTTTCTTCACCG TCATCGCTCTATACTATGTCGAGGAGGAGCCGCTCACCGAGAAGCCGCCCCTCGAAGAAGAGGATCCTAGTCTCGAAGTCTCGACCTGCTCCGGGATGCC GTTTTTCGGGGATTTGGTGAGTGCGGTGAAGACCATGAAGAGGCCCATGGCCATCCTTTTGGTGATGACATCTATCAACTGGATTGCTTGGTTCCCTTTC TTCCTCTACTCCACTGACTGGACGGGGAGGGAAGTTTACGACGGAGATTCTGCCGCTGGGAGTCTAGCGGAGCAGAAAGCATACGCCCACGGCGTCCACA TTGGCTCGCTGGGGTTGATGATTAACGCCGTCGTGATGGGGTACGTTTCGCTAGGAACCGACACGATGAGCCGGTGGTTCGGAGGCGCTGGGAAGCTGTG GGGGGTAGTGAACATCATTCTCGCCATTGGTATGGGGTTGACGTTGTTGATTAGTAAGTTAGCCGATTCCACTCGGAAATTCGCCGACAATGGGACCGCT CTACCGCCGCCTCTCGGTATTCAGGTCGGAACGTTGGCCGTCTTTGCGCTCTTGGGAATTCCTCTTGCGGTGGCTTATAGTGTTCCTTACGCTTTGGCAT CAATATTCTCCCATGAAGCTGGTGCAGGTCAAGGGCTTTCACTTGGATTACTGAATATTTCCATAGTCATCCCACAGATGATCGTATCGCTACTGAGTGG GCCATGGGACGCACTGTTCGGCGGCGGAAACATGCCGTCGTTTGTGGTCGGAGGAATTGCGGCGGCCTGCAGTGCGGTAGTAGCTCTATTGTTCCTACCA TCAGGCCCGCCGCCGAACACTGCGGCGGGGGAGGGCAAGACCGTCGACAACTAG
AA sequence Show only first row Show all	>Lus10028614 pacid=23164521 polypeptide=Lus10028614 locus=Lus10028614.g ID=Lus10028614.BGIv1.0 annot-version=v1.0 MNEQSPPDESQKKPFMNRLKGLYAYRKLILVAAIAIGLQFGWALQLSLLTPYVQLLGIPHAYAGFIWLCGPISGLIVQPLVGYYSDRCTSRFGRRRPFIG TGVALVAVSVLLIGYAADIGHTAGDDLSKEMKPRAITIFVLGFWILDVSNNVLMGPCRALLADLSGSDHKKTRVANSFFAFFVAIGNVLGYAAGSFNDIH KVFPFTKTKACNVFCANLKSCFFISAALIIFFTVIALYYVEEEPLTEKPPLEEEDPSLEVSTCSGMPFFGDLVSAVKTMKRPMAILLVMTSINWIAWFPF FLYSTDWTGREVYDGDSAAGSLAEQKAYAHGVHIGSLGLMINAVVMGYVSLGTDTMSRWFGGAGKLWGVVNIILAIGMGLTLLISKLADSTRKFADNGTA LPPPLGIQVGTLAVFALLGIPLAVAYSVPYALASIFSHEAGAGQGLSLGLLNISIVIPQMIVSLLSGPWDALFGGGNMPSFVVGGIAAACSAVVALLFLP SGPPPNTAAGEGKTVDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10028614 [exp]	0	1
AT5G27930			Protein phosphatase 2C family ...		Lus10031475 [exp]	17.0	0.8082
					Lus10031461 [exp]	38.2	0.7366
					Lus10013984 [exp]	39.8	0.6591
AT3G47640	bHLH	PYE, bHLH047, P...	POPEYE, basic helix-loop-helix...		Lus10008622 [exp]	49.6	0.7070
AT5G38060			unknown protein		Lus10009105 [exp]	63.6	0.6865
AT4G36850			PQ-loop repeat family protein ...		Lus10016795 [exp]	97.6	0.6550
AT1G11340			S-locus lectin protein kinase ...		Lus10030765 [exp]	121.2	0.6509
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10010108 [exp]	157.0	0.6394
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10012611 [exp]	212.0	0.6323

Compare expression of checked genes

Lus10028614 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.