Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71880 142 / 2e-40 ATSUC1, SUC1 ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 1, sucrose-proton symporter 1 (.1) AT1G71890 141 / 3e-40 SUC5, ATSUC5 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) AT1G22710 140 / 7e-40 SUT1, ATSUC2, SUC2 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) AT1G66570 138 / 1e-39 ATSUC7 sucrose-proton symporter 7 (.1.2.3) AT5G06170 134 / 1e-37 ATSUC9 sucrose-proton symporter 9 (.1) AT2G14670 129 / 2e-35 ATSUC8 sucrose-proton symporter 8 (.1) AT5G43610 126 / 1e-34 ATSUC6 sucrose-proton symporter 6 (.1) AT1G09960 121 / 1e-32 ATSUC4, SUC4, ATSUT4, SUT4 sucrose transporter 4 (.1) AT2G02860 118 / 2e-31 ATSUT2, ATSUC3, SUT2 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028616 [exp] 192 / 4e-59 AT1G71890 617 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10018915 [exp] 191 / 1e-58 AT1G71890 616 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10029766 [exp] 163 / 6e-48 AT1G22710 655 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10028614 [exp] 158 / 3e-46 AT1G71890 603 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10018914 [exp] 155 / 2e-45 AT1G71890 593 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10017910 [exp] 137 / 2e-38 AT1G71890 693 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10007702 [exp] 135 / 9e-38 AT1G22710 588 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10022633 [exp] 129 / 2e-37 AT1G22710 248 / 1e-79 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10032815 [exp] 125 / 3e-34 AT1G09960 694 / 0.0 sucrose transporter 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G115200 [exp] 143 / 1e-40 AT1G22710 643 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.019G085800 [exp] 142 / 2e-40 AT1G22710 645 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.002G106900 [exp] 123 / 2e-33 AT1G09960 674 / 0.0 sucrose transporter 4 (.1) Potri.010G093600 [exp] 116 / 8e-31 AT2G02860 816 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) Potri.008G148100 [exp] 116 / 1e-30 AT2G02860 849 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10028615 pacid=23164608 polypeptide=Lus10028615 locus=Lus10028615.g ID=Lus10028615.BGIv1.0 annot-version=v1.0 ATGAAGACACACAACGCCGAAATAAAGTCCGCCGCTAATCCGCCGCAAGTACTGCCGGAGTCGCAAGCTCCGACCACCACCACCACCACTAAGTCAGCAC TCCACGCCTACAGGAAGATAATTCTCGTGGCGGCGATCGCAATCGGACACCAGTTCGGGTGGGCCCTACAGCTCTCCTTACTCACCCCATACGTGCAGCT CCTTGGGATACCCCACACCTACGCCTCTCTGATCTGGCTGTGTGGGCCCATCTCTGGATTAATCGTCCAACTGTTCGTTAGATACTATAGCGATGGTTGC ACCTCCCGCTTCGGCCGTCGCCGCCCTTATATCGCGTCTGGCACCGCCTTGGTCCTCGTCTCCGTCTTCCTCATCGGTTTTTTCCGCCGACATCGGCGCT TCCGCCGGCGACGACCTGAGCAAGACCTCCAAGCCGCCTGCAACCACGGTCTTCGTCATTGGATTCTGGATCCTCGACGTCGCCAACATGATGATGGGAC CTAG
AA sequence Show only first row Show all	>Lus10028615 pacid=23164608 polypeptide=Lus10028615 locus=Lus10028615.g ID=Lus10028615.BGIv1.0 annot-version=v1.0 MKTHNAEIKSAANPPQVLPESQAPTTTTTTKSALHAYRKIILVAAIAIGHQFGWALQLSLLTPYVQLLGIPHTYASLIWLCGPISGLIVQLFVRYYSDGC TSRFGRRRPYIASGTALVLVSVFLIGFFRRHRRFRRRRPEQDLQAACNHGLRHWILDPRRRQHDDGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66570		ATSUC7	sucrose-proton symporter 7 (.1...		Lus10028615 [exp]	0	1
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10043289 [exp]	8.0	0.7245
					Lus10007128 [exp]	16.1	0.7041
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10019433 [exp]	20.6	0.6881
					Lus10006880 [exp]	22.4	0.6174
AT5G07980			dentin sialophosphoprotein-rel...		Lus10034692 [exp]	30.8	0.6929
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Lus10031387 [exp]	33.0	0.6525
AT3G55360		ECR, CER10, ATT...	ENOYL-COA REDUCTASE, ECERIFERU...		Lus10001695 [exp]	41.7	0.6523
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10004215 [exp]	67.3	0.6092
AT3G52720		CAH1, ATACA1, A...	A. THALIANA ALPHA CARBONIC ANH...		Lus10021356 [exp]	86.1	0.5827
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10030660 [exp]	106.6	0.5791

Compare expression of checked genes

Lus10028615 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.