Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71890 541 / 0 SUC5, ATSUC5 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) AT1G22710 534 / 0 SUT1, ATSUC2, SUC2 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) AT2G14670 533 / 0 ATSUC8 sucrose-proton symporter 8 (.1) AT1G66570 531 / 0 ATSUC7 sucrose-proton symporter 7 (.1.2.3) AT5G43610 528 / 0 ATSUC6 sucrose-proton symporter 6 (.1) AT1G71880 521 / 0 ATSUC1, SUC1 ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 1, sucrose-proton symporter 1 (.1) AT5G06170 512 / 9e-179 ATSUC9 sucrose-proton symporter 9 (.1) AT1G09960 417 / 5e-141 ATSUC4, SUC4, ATSUT4, SUT4 sucrose transporter 4 (.1) AT2G02860 374 / 4e-123 ATSUT2, ATSUC3, SUT2 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018915 [exp] 923 / 0 AT1G71890 616 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10029766 [exp] 676 / 0 AT1G22710 655 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10028614 [exp] 601 / 0 AT1G71890 603 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10018914 [exp] 600 / 0 AT1G71890 593 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10017910 [exp] 573 / 0 AT1G71890 693 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10007702 [exp] 478 / 4e-165 AT1G22710 588 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10032815 [exp] 429 / 6e-146 AT1G09960 694 / 0.0 sucrose transporter 4 (.1) Lus10014821 [exp] 417 / 9e-143 AT1G71890 532 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10009428 [exp] 409 / 6e-140 AT1G22710 471 / 1e-164 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G115200 [exp] 579 / 0 AT1G22710 643 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.019G085800 [exp] 576 / 0 AT1G22710 645 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.002G106900 [exp] 429 / 5e-146 AT1G09960 674 / 0.0 sucrose transporter 4 (.1) Potri.010G093600 [exp] 380 / 2e-125 AT2G02860 816 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) Potri.008G148100 [exp] 376 / 5e-124 AT2G02860 849 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Lus10028616 pacid=23164549 polypeptide=Lus10028616 locus=Lus10028616.g ID=Lus10028616.BGIv1.0 annot-version=v1.0 ATGAAGACCCTCAACGTCGACATGAAATCCGCCGCCAACCCGCCGCAGCTCCCGCCGGAGTCCCAAATTCCGGCAACCAAAACCACGTCAGCACTCTACG CCTACCGTGAGATCATCCTCGTGGCGGCGATCGCAATCGGACTCCAGTTCGGGTGGGCCCTACAGCTCTCCTTGCTCACGCCGTACGTGCAGCTCCTCGG GATCCCCCACACCTACGCCGCCTTCATCTGGCTGTGTGGGCCCATCTCCGGATTGATCGTCCAGCCGTTGGTGGGGTACTACAGCGACCGTTGCACCTCC CGCTTCGGCCGCCGCCGTCCTTTCATCTTCGGCGGCACAGCCTTTGTCCTCGTTTCTATATTCCTCATCGGCTTCGCCGCCGATATCGGCGCTGCTGCCG GCGACGACTTGACGAAAGCCGTCAAACCTCGAGCAATTGCGGTGTTCGTCATCGGTTTCTGGATCCTCGACGTGGCCAATAACATGATGATGGGACCTTG TCGTGCCTTCCTTGGCGACCTCGCCGGAACCAGCCAGAAGAAAACGCGCATAGGCAATTCCTTCTTCTCATTCTTCGTAGCCGTCGGCAACGTTCTTGGA TACGGCGCAGGTAGTTACAGCAACCTCTACAAGATCTTCCCGTTCACAAAGACCGAGGCCTGCAACGTTTACTGCGCGAATCTCAAGTCATGCTTCTTCA TCTCCATCACCTTGCTCGTTACCTTCTCCGGGATCGCTCTGTACTTCGTCAAAGAGCGGCCGTTGTCGCCGGACGGTAAGGTCATCTCCGGCGAGGGCGA TGACGACGACGAGGTGGACACTTCCATGACCTCTCCACCTCCCTCGTGCTTCTTCATCGAACTGTTCGGAGCGGTGAGGGCGATGAAGAAGCCGATGATA ATTCTCTTGATAGTGACCTGTCTCAACTGGATCGGATGGTTCCCTTTCTTCCTCTACGACACCGACTGGATGGGCAGGGAAGTGTACGGAGGCGAATCGA ACGGTACACCGGGGCAGGTCAAAGTGTACGCCAACGGAGTCCGAGCCGGAGCAATCGGGCTGATCTTAAACTCGGTCGTGCTCGGATTCACTTCCTTGGG AATCGAGACGCTCAGCAAGTGGGTCGGTGGGGCCAAGAGGCTATGGGGGATAGTCAACATCTTCCTCGCTATCTGCATGGGGTTGACTGTGCTGGTCAGC AAATTGGCTGCTTCGAACCGAGAATATGTCGTCGGTGGCGACCATCCTTTGTCGCCGTCGGCAGGGATTCAAGCCGGAGCTTTGGTACTCTTTGCTGTTC TAGGAGTTCCCTTGGCGGTGGCATATAGTGTCCCTTTTGCGCTGACGTCGATATTCGCTCAAGAATGCGGCATAGGTCAAGGACTTGGGTTTGGAGTGCT GAATCTTTCTGTCGTTATTCCACAGATGATGGTATCGATACTTAGTGGACCATGGGACTCACTCTTCGGCGGAGGCAATCTGCCGTCGTTCGTCGTTGGA GCAATCGCATCGGCATGCAGCGGGCTACTAGCTCTGACATTGCTCCCTCCTCCGGCGCCTGAATCGGTCGTCGGAAAACCGGTCATCGTCGGTGGATTCC ATTGA
AA sequence Show only first row Show all	>Lus10028616 pacid=23164549 polypeptide=Lus10028616 locus=Lus10028616.g ID=Lus10028616.BGIv1.0 annot-version=v1.0 MKTLNVDMKSAANPPQLPPESQIPATKTTSALYAYREIILVAAIAIGLQFGWALQLSLLTPYVQLLGIPHTYAAFIWLCGPISGLIVQPLVGYYSDRCTS RFGRRRPFIFGGTAFVLVSIFLIGFAADIGAAAGDDLTKAVKPRAIAVFVIGFWILDVANNMMMGPCRAFLGDLAGTSQKKTRIGNSFFSFFVAVGNVLG YGAGSYSNLYKIFPFTKTEACNVYCANLKSCFFISITLLVTFSGIALYFVKERPLSPDGKVISGEGDDDDEVDTSMTSPPPSCFFIELFGAVRAMKKPMI ILLIVTCLNWIGWFPFFLYDTDWMGREVYGGESNGTPGQVKVYANGVRAGAIGLILNSVVLGFTSLGIETLSKWVGGAKRLWGIVNIFLAICMGLTVLVS KLAASNREYVVGGDHPLSPSAGIQAGALVLFAVLGVPLAVAYSVPFALTSIFAQECGIGQGLGFGVLNLSVVIPQMMVSILSGPWDSLFGGGNLPSFVVG AIASACSGLLALTLLPPPAPESVVGKPVIVGGFH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10028616 [exp]	0	1
AT2G46100			Nuclear transport factor 2 (NT...		Lus10036387 [exp]	1.4	0.9429
AT1G27200			Domain of unknown function (DU...		Lus10013291 [exp]	1.7	0.9340
AT5G65840			Thioredoxin superfamily protei...		Lus10011727 [exp]	3.5	0.9367
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10004201 [exp]	3.5	0.9217
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Lus10035696 [exp]	4.0	0.9264
AT1G06460		ACD31.2, ACD32....	ALPHA-CRYSTALLIN DOMAIN 31.2, ...		Lus10007366 [exp]	5.5	0.9255
					Lus10026102 [exp]	7.2	0.8879
AT5G01550		LECRKA4.2	lectin receptor kinase a4.1 (....		Lus10022662 [exp]	9.2	0.8838
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10038020 [exp]	10.4	0.8980
AT4G13150			unknown protein		Lus10025925 [exp]	11.2	0.8859

Compare expression of checked genes

Lus10028616 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.