Plant FIBer expression Database

Lus10028617 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G21350 275 / 2e-94 Thioredoxin superfamily protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018916
[exp]
358 / 2e-126 AT1G21350 315 / 8e-109 Thioredoxin superfamily protein (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G071000
[exp]
273 / 3e-93 AT1G21350 350 / 8e-123 Thioredoxin superfamily protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0172 Thioredoxin PF00578 AhpC-TSA AhpC/TSA family
Representative CDS sequence
>Lus10028617 pacid=23164566 polypeptide=Lus10028617 locus=Lus10028617.g ID=Lus10028617.BGIv1.0 annot-version=v1.0
ATGGCGGCAGCAGCTGTTCCCGTTCTTCCTACTGCTGCAGCGACGTCTTCCAATTCCGGAAGAAGAATCGCATGCACTGGTTTGATTCTTCAGCCGACAT
GGAGACATTCGGAGATCGGGAGCTTCCGATCGCTGCGATTGAAGTCGACGAGGAAATTGGTGGTGCGAGCTGCAAGGACGGAGTCAAAGGGCGTTTCGCT
AGGATTCAAAGCTCCTGACTTTCAACTGCTGGAGCCTCTCACTGGCAAGACATGGGAGCTCGAAGATTTCGAGTCGCATCCTGGTTTGCTGAAAGGCCTT
GCTGTCGTTGCAATATCGTCGAACTCTGTAGTTACACACCCACAGGATGGACCGGAATTCATGGCTGAAGATGCGAAACTGTTTAACTATCCATTTCCGT
ATTTGTACGATGAGTCCCAAGAGGTTGCACGAGCTTTCGGAGCTGTCTGCACACCAGAGTTTTTCTTGTTCAAAAAGGATGGGAGGAGACCATTTGAGCT
GGTTTATCATGGCCAATTCGACGACTCCAGACCCAACAGTAATGTGCCTATAACCGGAAGGGACCTAAGCCGAGCGATAGACTGTGTTCTCAGTGGGCAG
CCAGTTCCATCTGTTCAGACACCAAGGTAG
AA sequence
>Lus10028617 pacid=23164566 polypeptide=Lus10028617 locus=Lus10028617.g ID=Lus10028617.BGIv1.0 annot-version=v1.0
MAAAAVPVLPTAAATSSNSGRRIACTGLILQPTWRHSEIGSFRSLRLKSTRKLVVRAARTESKGVSLGFKAPDFQLLEPLTGKTWELEDFESHPGLLKGL
AVVAISSNSVVTHPQDGPEFMAEDAKLFNYPFPYLYDESQEVARAFGAVCTPEFFLFKKDGRRPFELVYHGQFDDSRPNSNVPITGRDLSRAIDCVLSGQ
PVPSVQTPR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G21350 Thioredoxin superfamily protei... Lus10028617
[exp]
0 1
AT1G08550 AVDE1, NPQ1 ARABIDOPSIS VIOLAXANTHIN DE-EP... Lus10042524
[exp]
3.2 0.9320
AT3G61080 Protein kinase superfamily pro... Lus10041374
[exp]
6.9 0.9259
AT1G35420 alpha/beta-Hydrolases superfam... Lus10016930
[exp]
9.2 0.9049
AT1G55370 NDF5 NDH-dependent cyclic electron ... Lus10002626
[exp]
10.6 0.8958
AT4G15560 AtCLA1, DXS, DX... 1-DEOXY-D-XYLULOSE 5-PHOSPHATE... Lus10033987
[exp]
12.8 0.8803
Lus10008697
[exp]
17.9 0.9072
AT4G39710 PnsL4, FKBP16-2 Photosynthetic NDH subcomplex... Lus10016811
[exp]
19.7 0.9142
AT2G30170 Protein phosphatase 2C family ... Lus10031355
[exp]
21.5 0.8850
AT5G14260 Rubisco methyltransferase fami... Lus10041585
[exp]
22.0 0.8901
AT5G48830 unknown protein Lus10038165
[exp]
22.4 0.9044

Lus10028617 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.