Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21360 224 / 3e-74 GLTP2 glycolipid transfer protein 2 (.1) AT3G21260 216 / 2e-70 GLTP3 GLYCOLIPID TRANSFER PROTEIN 3, Glycolipid transfer protein (GLTP) family protein (.1), Glycolipid transfer protein (GLTP) family protein (.2), Glycolipid transfer protein (GLTP) family protein (.3) AT2G33470 128 / 1e-36 ATGLTP1, GLTP1 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) AT2G34690 49 / 7e-07 ACD11 ACCELERATED CELL DEATH 11, Glycolipid transfer protein (GLTP) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018917 [exp] 404 / 5e-145 AT3G21260 229 / 3e-76 GLYCOLIPID TRANSFER PROTEIN 3, Glycolipid transfer protein (GLTP) family protein (.1), Glycolipid transfer protein (GLTP) family protein (.2), Glycolipid transfer protein (GLTP) family protein (.3) Lus10042793 [exp] 283 / 1e-92 AT1G21370 486 / 2e-170 unknown protein Lus10029765 [exp] 261 / 8e-89 AT3G21260 212 / 9e-70 GLYCOLIPID TRANSFER PROTEIN 3, Glycolipid transfer protein (GLTP) family protein (.1), Glycolipid transfer protein (GLTP) family protein (.2), Glycolipid transfer protein (GLTP) family protein (.3) Lus10021169 [exp] 127 / 7e-36 AT2G33470 334 / 3e-118 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Lus10011806 [exp] 121 / 1e-33 AT2G33470 324 / 4e-114 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Lus10003626 [exp] 118 / 2e-32 AT2G33470 242 / 3e-81 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Lus10008244 [exp] 92 / 2e-22 AT2G33470 216 / 1e-71 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G071100 [exp] 266 / 2e-90 AT1G21360 253 / 8e-86 glycolipid transfer protein 2 (.1) Potri.005G188600 [exp] 265 / 3e-90 AT1G21360 259 / 3e-88 glycolipid transfer protein 2 (.1) Potri.010G069600 [exp] 134 / 5e-39 AT2G33470 332 / 3e-117 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Potri.002G035600 [exp] 124 / 3e-35 AT2G33470 273 / 2e-94 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Potri.008G168800 [exp] 122 / 3e-34 AT2G33470 315 / 1e-110 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Potri.006G051800 [exp] 43 / 7e-05 AT2G34690 305 / 9e-107 ACCELERATED CELL DEATH 11, Glycolipid transfer protein (GLTP) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08718 [flax] [poplar] GLTP Glycolipid transfer protein (GLTP)
Representative CDS sequence Show only first row Show all	>Lus10028618 pacid=23164531 polypeptide=Lus10028618 locus=Lus10028618.g ID=Lus10028618.BGIv1.0 annot-version=v1.0 ATGGAGAAAGTTTCAGAGATCAAATCAGCCATTGATGAGCTTACAGTAATGGCCATCACAATGAAACCTCATGATCATGATGATGATGGCTATGATCATG GTGTTGATGGCCATAACTGCAGTGATGGACATCCTGCAGCTACAATCCCCACAATGCCCTTTCTCCATCTCTGCAGCTTGGTCATTCAGGTTCTTGATAA GATTGGTCCAACAATGGCTGTTCTTAGACAAGACATAGCTCAAAACATCCAGGTGAGGAAGGTTCTGAAAACAAGATTGGAAGACCAATATGAAGCTGAT CCTTCACTGTACTCGAACTTGGTCGAGATTCTGAAGAAAGAATCCAGTGAAGGCATCTCCAAGAAGAGGGACAGTTGCTGCAAGGCCTTTGTATGGCTTA CAAGGTCATTGGATTTCACAGCTAGCTTGTTACAAAGGCTAGCCAAAGATCCTGAGCAGAACATGGAGATAGCTGTGGGAGAATCTTACATCATCAGCTT GAAGCCATGGCATGGATGGATCTCTTCAGCTGCATTAAAAGTAGCTCTCAAGCTTGTACCAGACAACAGAACATTCATCACACTCCTGAAGCCAACAGAA GAGAACTATGAGTTCTTGAAAGAGGATATGCAGGCCATGGTCTCATTGCTTGTTCCTCTGTTAAAAGACATCCATGCTACTCTGAGGCTGTATGGACTGG ATAGGGTGAAGGCCATTTGA
AA sequence Show only first row Show all	>Lus10028618 pacid=23164531 polypeptide=Lus10028618 locus=Lus10028618.g ID=Lus10028618.BGIv1.0 annot-version=v1.0 MEKVSEIKSAIDELTVMAITMKPHDHDDDGYDHGVDGHNCSDGHPAATIPTMPFLHLCSLVIQVLDKIGPTMAVLRQDIAQNIQVRKVLKTRLEDQYEAD PSLYSNLVEILKKESSEGISKKRDSCCKAFVWLTRSLDFTASLLQRLAKDPEQNMEIAVGESYIISLKPWHGWISSAALKVALKLVPDNRTFITLLKPTE ENYEFLKEDMQAMVSLLVPLLKDIHATLRLYGLDRVKAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21360		GLTP2	glycolipid transfer protein 2 ...		Lus10028618 [exp]	0	1
AT5G51950			Glucose-methanol-choline (GMC)...		Lus10015012 [exp]	5.5	0.8869
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011986 [exp]	8.5	0.8672
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Lus10025923 [exp]	9.3	0.8653
AT4G30320			CAP (Cysteine-rich secretory p...		Lus10015522 [exp]	15.7	0.7775
AT1G20870			HSP20-like chaperones superfam...		Lus10007642 [exp]	16.5	0.8648
AT1G70850		MLP34	MLP-like protein 34 (.1.2.3)		Lus10002644 [exp]	18.2	0.8359
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10033581 [exp]	18.8	0.8442
AT3G50470		MLA10, HR3	INTRACELLULAR MILDEW A 10, hom...		Lus10009328 [exp]	20.1	0.8511
AT5G20550			2-oxoglutarate (2OG) and Fe(II...		Lus10016145 [exp]	20.9	0.8070
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10034502 [exp]	25.5	0.8246

Compare expression of checked genes

Lus10028618 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.