Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49720 407 / 3e-134 TSD1, IRX2, DEC, RSW2, OR16PEP, KOR1 ,AtGH9A1 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) AT4G24260 397 / 3e-130 ATGH9A3 ,KOR3 glycosyl hydrolase 9A3 (.1) AT1G65610 391 / 4e-128 ATGH9A2 ,KOR2 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) AT4G11050 277 / 2e-84 ATGH9C3 glycosyl hydrolase 9C3 (.1) AT1G64390 276 / 5e-84 ATGH9C2 glycosyl hydrolase 9C2 (.1) AT4G02290 273 / 6e-84 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT1G19940 270 / 1e-82 ATGH9B5 glycosyl hydrolase 9B5 (.1) AT1G02800 269 / 1e-82 ATCEL2 cellulase 2 (.1) AT4G09740 265 / 3e-81 ATGH9B14 glycosyl hydrolase 9B14 (.1) AT1G75680 264 / 2e-80 ATGH9B7 glycosyl hydrolase 9B7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018918 [exp] 1217 / 0 AT5G49720 423 / 1e-140 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10026863 [exp] 422 / 4e-140 AT1G65610 747 / 0.0 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) Lus10012162 [exp] 396 / 4e-130 AT5G49720 989 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10026275 [exp] 396 / 7e-130 AT5G49720 986 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10036331 [exp] 337 / 3e-107 AT5G49720 483 / 6e-164 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10010029 [exp] 333 / 3e-107 AT5G49720 465 / 1e-158 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10034515 [exp] 289 / 7e-90 AT1G19940 688 / 0.0 glycosyl hydrolase 9B5 (.1) Lus10033156 [exp] 288 / 2e-89 AT1G19940 687 / 0.0 glycosyl hydrolase 9B5 (.1) Lus10008208 [exp] 283 / 5e-88 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G188500 [exp] 792 / 0 AT5G49720 418 / 9e-139 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Potri.010G177300 [exp] 429 / 1e-142 AT1G65610 724 / 0.0 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) Potri.008G079500 [exp] 422 / 3e-140 AT1G65610 699 / 0.0 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) Potri.003G151700 [exp] 403 / 8e-133 AT5G49720 910 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Potri.001G078900 [exp] 401 / 5e-132 AT5G49720 904 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Potri.002G202400 [exp] 280 / 1e-86 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.001G092200 [exp] 281 / 5e-86 AT1G64390 951 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.014G157600 [exp] 275 / 2e-84 AT2G32990 800 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.014G126900 [exp] 274 / 2e-84 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.003G139600 [exp] 276 / 8e-84 AT1G64390 999 / 0.0 glycosyl hydrolase 9C2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10028619 pacid=23164582 polypeptide=Lus10028619 locus=Lus10028619.g ID=Lus10028619.BGIv1.0 annot-version=v1.0 ATGGTGGGTTCATCGTCAGCTCCGATGGGTTCCCCCACTTCCGACATAGACAGGACCAGGATATCGTTCGTCCATACGGTTCCGGCAGCGAGCAGGATCC TGCCGTCGGCGAGCCAGTGGAACTCCATAGAGCTGGACTTCAACCTCGTCCCACGTTCCGAAAACGCATACCACTCGATTCCTTCTAAGTTCTCCAAGTC CTACACCTACGAGATGGCCATCTCGGATAAGAAGTACTTCAAGAGGTTCCTATGTGTGTTGAGCCTTGTAATCCTTGTTGCAATAGGACTCCCTTTGCTC ATCCACTTCTTGCCTCGGACTCGTGGCCATAGTAATGTTCCGATGAACCTCACTCTGGCTGTCAACCAGGCTCTCACCTTCTTCGACGCCCAGAAATCCG GGCGATATCCTAGCACGAGTCCGGTGAAGTTTCGGGGAATTTCGGGGATGGAAGACGGGAATTCGAGGAGTCCGCCCGTGGATTTGAAAGGAGGGTTCTA TGATTCAGGGAGCAATGTGAAGTTCAGCTTCCCAACAGCATACACAGTGACACTTCTGAGCTGGAGTGTGATCGAGTACCATAGCAAGTATGAAGATGTT GGTGAGCTTCAACATGTTAAGAACATCATCAAGTGGGGTAGTGATTACTTGCTCAAGGCCTTTGTTAGGTCAAACTCTACCAATGGTCCCATCACATTGT ACTCACAGAATGTGGACCAACATAGTGAGATCCCGATCCTGTTGGACTCCGCGACTCAGCCAGATCCTTCTGTTGGCAGCACTGGAAATGGAACCAACCC ACACACTGACCTAAGCTGCTGGCAAAGGCCAGAGGACATGAGCTATCCAAGGCCGGTTTTTGCCTGCGACAGCTCGGCCGCTGATCTGGCAGGCGAAGTC GTCGCAGCCTTGTCAGCAGCATCAATGGTTTTCCAAGAAGAGAAGGATTACTCCCATGAACTAGTCACGGCAGCAGTGAGCCTTTATGGCTCTGCAACTA AGAACAATGGTGGAAAGAACACTTACACTAACATCAAGGCATGTGGTGGTGAGGCAACCAATTTTTACAACTCATCTGGGTTCCAAGATGAGCTTGTTTG GGGTGGAACTTGGCTCTTCTTTGCCACTGGTAACACTTCTTACCTTGAGTACGCTGCTCTCAACTTCACTGCAGCTGTGAAGCAGCAGGTTCCTCAAGAG CAAGGTGTCTTCTATTGGAACAATAAAGTGACTGCTACTGGTGTTTTACTGACGAGACTTAGGTTCTTCCGCGATCTTGGATACCCTTTCGAGATAGGAT TCAAAGCAGCATCAGATATGACAGAAGCCATGATATGTTCTTACCTTTCTGATAAGAACTTCCACAAGTCCCCTGGGGGTTTGCTCATCTTGATGCCTGA TGGAGGTCCACCACTTCAGTATGCTGCAACAGCATCATTCCTCACTAAATTGTTCAGTGACTACCTCGAACTCGGTCTTCGGTCCAGTGTCACTTGTGGC ACCAATGGCTTCTCTCTTGAAACCATGAGGACATTCTCAACTTCACAAGTAAGGTACATTCTTGGAGACAATCCAATGAAGACGAGCTACATGGTAGGTT TCGGGAAGAAGTATCCGACGCACGTTCATCACAGGGGAGCATCGATCCCAGCTGACGGTAAGCAGTACAGTTGCAGCGAAGGCGATCAATGGATGCAGAA GAAAGAACCAAATCCCAACACTGTTTATGGAGCAATGGTTGCAGGACCGGATAAGTCCGACAAGTTTTCCGACGACAGGACCAAGCCGTGGTTCACCGAG CCAACCATAGCTAGCAATGCAGGCCTAGTTGCTGCCCTCATAGCGATCCACGATCCGCCGTCTGGATCTTTGGTGGGTATGGATAAAGATAGAATCTTTT CAAGTGTTCATCTAACCCCACCAGCTAGTTAG
AA sequence Show only first row Show all	>Lus10028619 pacid=23164582 polypeptide=Lus10028619 locus=Lus10028619.g ID=Lus10028619.BGIv1.0 annot-version=v1.0 MVGSSSAPMGSPTSDIDRTRISFVHTVPAASRILPSASQWNSIELDFNLVPRSENAYHSIPSKFSKSYTYEMAISDKKYFKRFLCVLSLVILVAIGLPLL IHFLPRTRGHSNVPMNLTLAVNQALTFFDAQKSGRYPSTSPVKFRGISGMEDGNSRSPPVDLKGGFYDSGSNVKFSFPTAYTVTLLSWSVIEYHSKYEDV GELQHVKNIIKWGSDYLLKAFVRSNSTNGPITLYSQNVDQHSEIPILLDSATQPDPSVGSTGNGTNPHTDLSCWQRPEDMSYPRPVFACDSSAADLAGEV VAALSAASMVFQEEKDYSHELVTAAVSLYGSATKNNGGKNTYTNIKACGGEATNFYNSSGFQDELVWGGTWLFFATGNTSYLEYAALNFTAAVKQQVPQE QGVFYWNNKVTATGVLLTRLRFFRDLGYPFEIGFKAASDMTEAMICSYLSDKNFHKSPGGLLILMPDGGPPLQYAATASFLTKLFSDYLELGLRSSVTCG TNGFSLETMRTFSTSQVRYILGDNPMKTSYMVGFGKKYPTHVHHRGASIPADGKQYSCSEGDQWMQKKEPNPNTVYGAMVAGPDKSDKFSDDRTKPWFTE PTIASNAGLVAALIAIHDPPSGSLVGMDKDRIFSSVHLTPPAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10028619 [exp]	0	1
					Lus10000550 [exp]	1.7	1.0000
AT4G22200		AKT3, AKT2/3	potassium transport 2/3 (.1)		Lus10003645 [exp]	3.5	1.0000
AT4G10020		ATHSD5	hydroxysteroid dehydrogenase 5...		Lus10001280 [exp]	4.2	1.0000
					Lus10005465 [exp]	4.6	1.0000
AT1G12570			Glucose-methanol-choline (GMC)...		Lus10002957 [exp]	5.2	1.0000
AT3G20760			Nse4, component of Smc5/6 DNA ...		Lus10004185 [exp]	6.7	1.0000
					Lus10025894 [exp]	7.9	1.0000
					Lus10010778 [exp]	8.5	1.0000
					Lus10009800 [exp]	8.5	1.0000
AT1G11940			Core-2/I-branching beta-1,6-N-...		Lus10035297 [exp]	10.5	1.0000

Compare expression of checked genes

Lus10028619 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.