Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77140 937 / 0 ATVPS45, VPS45 vacuolar protein sorting 45 (.1) AT1G02010 101 / 3e-22 SEC1A secretory 1A (.1.2) AT1G12360 92 / 2e-19 KEU keule, Sec1/munc18-like (SM) proteins superfamily (.1) AT4G12120 89 / 2e-18 ATSEC1B, SEC1B Sec1/munc18-like (SM) proteins superfamily (.1) AT2G17980 67 / 1e-11 ATSLY1 Sec1/munc18-like (SM) proteins superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018921 [exp] 1097 / 0 AT1G77140 974 / 0.0 vacuolar protein sorting 45 (.1) Lus10015870 [exp] 91 / 7e-19 AT1G02010 909 / 0.0 secretory 1A (.1.2) Lus10009293 [exp] 86 / 2e-17 AT1G02010 868 / 0.0 secretory 1A (.1.2) Lus10024558 [exp] 78 / 1e-14 AT1G12360 1034 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Lus10032196 [exp] 71 / 1e-12 AT1G12360 1031 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Lus10023936 [exp] 58 / 1e-08 AT2G17980 994 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1) Lus10014435 [exp] 56 / 6e-08 AT2G17980 989 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G188000 [exp] 984 / 0 AT1G77140 999 / 0.0 vacuolar protein sorting 45 (.1) Potri.002G071600 [exp] 974 / 0 AT1G77140 996 / 0.0 vacuolar protein sorting 45 (.1) Potri.014G069300 [exp] 96 / 2e-20 AT1G02010 945 / 0.0 secretory 1A (.1.2) Potri.001G116900 [exp] 81 / 6e-16 AT1G12360 1113 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Potri.003G115800 [exp] 79 / 4e-15 AT1G12360 1083 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Potri.004G204400 [exp] 64 / 2e-10 AT2G17980 1013 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1) Potri.009G165300 [exp] 50 / 4e-06 AT2G17980 1003 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00995 [flax] [poplar] Sec1 Sec1 family
Representative CDS sequence Show only first row Show all	>Lus10028622 pacid=23164613 polypeptide=Lus10028622 locus=Lus10028622.g ID=Lus10028622.BGIv1.0 annot-version=v1.0 ATGGTGGTTGTCTCCGCTGCCCGGGATTACATCAACCGGATGCTGCAGGACATCTCCGGCATGAAGGTTCTGATCCTCGATTCACAAACGGTTAGTATTG TTAGTGTCGTCTATTCACAGTCGGACCTTCTTCAGAAGGAAGTGTTTTTGGTTGAAATGGTGGACACAATCTCGAAGTCTAAAGAATCTATGACGCATTT GAAAGCTGTTTGTTTTCTTCGCCCTACATCAGAGAATATCCAGTATTTGCGTCGCCAGCTAGCTAATCCTAGATTTGGGGAGTACCATCTGTTTTTCGCT AATATGTTGAAGGATACGCAGATACATATATTAGCCGACTCTGATGAACAAGAAGTTGTGCAGCAAGTTCAGGAGTTTTATGCAGACTTTGTGGCACTTG ATCCTTACCATTTCACTCTAAACATTCCTTCAAATCATATGTATATGCTTCCAGCAGTTGTTGATCCATCAGGATTGCAGAACTTCTGTGACCGAGTTGT GGACGGTATTGCAGCACTTTTCTTGGCACTGAAACGAAGGCCTGTTATTAGATATCAAAGGACTTCCGATGCTGCCAAAAGGATAGCTCAGGAATCAGCA AAGCTGATGTATCAGAAGGAAAGTGGCCTTTTTGATTTCAGAAGGGGAGAAGTTGCTCCTTTGTTGCTGATACTTGATCGAAGGGACGACCCATTAACTC CTTTGTTGAACCAGTGGACCTACCAGGCAATGGTTCATGAATTAATTGGTATTGAGGATAACAAAGTTGACCTGAGAGGCATTGGTAAATCATCAAAAGA TCAACAGGAAGTTGTGCTGTCATCAGAGCAAGATGGTTTCTTCAAGATTAACATGCATGAGAATTTTGGAGATATTGGGATGAATATCAAGCGGATGGTG GACGACTTTCAGCAGGTTGCAAAGAGTAACCAAAATATCCAGACAATAGATGACATGGCAAAGTTTGTCGAGAATTACCCCGAATATCGCAAAATGCATG GCAATGTGTCAAAGCACGTGACATTGGTGACTGAAATGAGCAAGATAGTTGAAGAGCGAAAACTCATGTTAGTTTCACAAACCGAACAGGAGTTAGCTTG CAACGGTGGCCAAGTGGCAGCTTTTGAGGCAGTGACCAATCTTCTATACAATGACAGTGTATCAGATATTGACCGCCTGCGGCTAGTAATGTTATATGCT TTGCGTTACGAGAAGGAGAGCCCCGTTCAGTTAATGCAGCTGTTCAATAAGCTTGCATCTCGAACTGCAAAATACAAGCCAGGGCTTGTGCAATTCCTGC TGAAGCAAGCAGGCGTGGACAAGCGAACCGGTGATCTCTTTGGGAATCGGGACTTCTTAAATATAGCTCGTAACATGGCTCGTGGTCTGAAGGGAGTTGA AAACGTATACACCCAGCACCAGCCTCTTCTTTCCCAAACAATGGAAAGCATAATCAAAGGACGGGTGAGGGATGTAGACTACCCATTCGTTGGCAATCAT TATCAACAAGCGAGGCCACAGGAAGTGATCATCTTTATTGTTGGCGGGACGACCTACGAGGAGTCACGGTCAGTTGCTCTAGCAAATGCCGTGAATCCCG GAATCCGATTCACACTTGGCGGCTCTGTAGTCCTCAATTCTCGAAGGTTTATAAAGGACCTGGAAGAAGCTCAGAGAATAGCCAAGTCGACCACCAATGT GGTATGA
AA sequence Show only first row Show all	>Lus10028622 pacid=23164613 polypeptide=Lus10028622 locus=Lus10028622.g ID=Lus10028622.BGIv1.0 annot-version=v1.0 MVVVSAARDYINRMLQDISGMKVLILDSQTVSIVSVVYSQSDLLQKEVFLVEMVDTISKSKESMTHLKAVCFLRPTSENIQYLRRQLANPRFGEYHLFFA NMLKDTQIHILADSDEQEVVQQVQEFYADFVALDPYHFTLNIPSNHMYMLPAVVDPSGLQNFCDRVVDGIAALFLALKRRPVIRYQRTSDAAKRIAQESA KLMYQKESGLFDFRRGEVAPLLLILDRRDDPLTPLLNQWTYQAMVHELIGIEDNKVDLRGIGKSSKDQQEVVLSSEQDGFFKINMHENFGDIGMNIKRMV DDFQQVAKSNQNIQTIDDMAKFVENYPEYRKMHGNVSKHVTLVTEMSKIVEERKLMLVSQTEQELACNGGQVAAFEAVTNLLYNDSVSDIDRLRLVMLYA LRYEKESPVQLMQLFNKLASRTAKYKPGLVQFLLKQAGVDKRTGDLFGNRDFLNIARNMARGLKGVENVYTQHQPLLSQTMESIIKGRVRDVDYPFVGNH YQQARPQEVIIFIVGGTTYEESRSVALANAVNPGIRFTLGGSVVLNSRRFIKDLEEAQRIAKSTTNVV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77140		ATVPS45, VPS45	vacuolar protein sorting 45 (....		Lus10028622 [exp]	0	1
AT1G77140		ATVPS45, VPS45	vacuolar protein sorting 45 (....		Lus10018921 [exp]	1.0	0.9243
AT2G17030			F-box family protein with a do...		Lus10023984 [exp]	2.0	0.8795
AT2G45120	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10000679 [exp]	4.0	0.8843
AT1G55620		CLCF, ATCLC-F, ...	chloride channel F (.1.2)		Lus10032888 [exp]	4.6	0.8837
AT1G05940		CAT9	cationic amino acid transporte...		Lus10028195 [exp]	4.9	0.8403
AT2G43240			Nucleotide-sugar transporter f...		Lus10027009 [exp]	7.7	0.8668
AT1G09910			Rhamnogalacturonate lyase fami...		Lus10000684 [exp]	8.4	0.8722
AT1G31780			unknown protein		Lus10035691 [exp]	10.9	0.8500
AT5G16730			Plant protein of unknown funct...		Lus10020373 [exp]	11.5	0.8231
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10022790 [exp]	11.8	0.8509

Compare expression of checked genes

Lus10028622 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.