Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77130 774 / 0 PGSIP2, GUX3 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) AT3G18660 698 / 0 PGSIP1, GUX1 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) AT4G33330 462 / 3e-155 PGSIP3, GUX2 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) AT1G08990 378 / 5e-123 PGSIP5 plant glycogenin-like starch initiation protein 5 (.1) AT1G54940 377 / 5e-123 PGSIP4 plant glycogenin-like starch initiation protein 4 (.1) AT5G18480 124 / 8e-30 PGSIP6 plant glycogenin-like starch initiation protein 6 (.1) AT1G60470 95 / 6e-21 ATGOLS4 galactinol synthase 4 (.1) AT4G26250 86 / 6e-18 ATGOLS6 galactinol synthase 6 (.1) AT1G56600 86 / 7e-18 ATGOLS2 galactinol synthase 2 (.1) AT1G60450 85 / 1e-17 ATGOLS7 galactinol synthase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018922 [exp] 1211 / 0 AT1G77130 847 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10020890 [exp] 712 / 0 AT3G18660 828 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Lus10033485 [exp] 494 / 7e-168 AT3G18660 677 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Lus10021731 [exp] 489 / 1e-165 AT4G33330 803 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Lus10042658 [exp] 483 / 5e-163 AT4G33330 801 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Lus10029932 [exp] 361 / 4e-116 AT1G54940 527 / 0.0 plant glycogenin-like starch initiation protein 4 (.1) Lus10031507 [exp] 359 / 7e-116 AT1G54940 542 / 0.0 plant glycogenin-like starch initiation protein 4 (.1) Lus10027949 [exp] 120 / 2e-28 AT5G18480 635 / 0.0 plant glycogenin-like starch initiation protein 6 (.1) Lus10000817 [exp] 110 / 2e-27 AT5G18480 329 / 2e-111 plant glycogenin-like starch initiation protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G187900 [exp] 932 / 0 AT1G77130 803 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Potri.005G061600 [exp] 776 / 0 AT3G18660 863 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Potri.007G107200 [exp] 776 / 0 AT3G18660 884 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Potri.014G029900 [exp] 488 / 1e-165 AT4G33330 791 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Potri.013G022900 [exp] 404 / 5e-133 AT1G08990 561 / 0.0 plant glycogenin-like starch initiation protein 5 (.1) Potri.005G033500 [exp] 399 / 4e-131 AT1G08990 555 / 0.0 plant glycogenin-like starch initiation protein 5 (.1) Potri.013G049100 [exp] 124 / 1e-29 AT5G18480 661 / 0.0 plant glycogenin-like starch initiation protein 6 (.1) Potri.010G150400 [exp] 91 / 1e-19 AT2G47180 519 / 0.0 galactinol synthase 1 (.1) Potri.008G101000 [exp] 87 / 3e-18 AT2G47180 507 / 0.0 galactinol synthase 1 (.1) Potri.014G116800 [exp] 86 / 5e-18 AT2G47180 568 / 0.0 galactinol synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10028623 pacid=23164490 polypeptide=Lus10028623 locus=Lus10028623.g ID=Lus10028623.BGIv1.0 annot-version=v1.0 ATGCCCGCCGGAGTAGCCGGAACATCCGGCGGCAGCGGCGCCACCTCTCCTAATTCCGTCGAGCACAGACACCGTCTCTCTTCTTCACTTTCCATGGGAG AAGATAGTCCCAGAAGGAGGTTCTTGAGGGGGAGGAATTTCAGAGATGTGGAGAAGGCATTCCATGTTCCTGCTCAATACAGGAGCCTCAATTGCAAGAC ATCTACGCTCAAATTCGTGCTGCTGATCATCGCGTTGGGCACATTGGTTACTCTCTACCGTTCTCCGGCTGTTCATGTTGCTGATTATCCTCACCATTTG GAAACGCAGTCTAGTTTGCGTTGGATCGAAGAGGATGTTGCTGTAGATCCTCGTTACATCTCAACAGCAGAAGTCGACTGGGACACAGTTTCAAACATAT TCGAGAAGCTGGATGATACAGATCAGTACCAAGGAATTGGATTGTTGAACTTTAACAGCAGCGAGGTCAAAACTTGGAAGCATTTCTTACCTGACGTTGA CCATGTAGTTCTTCAGCTTGACCATGTTCAAAAGAACGTAACTTGGGAGTCACTGTACCCGGAGTGGATAGACGAAGAAGAGGATTTCAAAGTTCCGACT TGCCCTCTGGTACCCAAAATTAAGTTCGGTGGGAAGCCGCGGATCGATGTTCTTGCGGTCAAACTTCCTTGCAACAAGTCCGGAGGGTGGTCAAGAGATG TTGCTAGCTTACATCTGCAGCTTGCTGCGGCAAGTCTTGCCTCTTCTGGCAAAAGTTACCATCCGGTTCGTGTGATCTTAATCACTGACTGCTTACCGGT TCCGAATTTGTTCACTTGCAAGGAGCTTAACTTTCGCGAGGGTAACATGTGGCTCTATGAACCCAACCCCCATAGGTTGAGACAGAAGTCACAGCTTCCG GCTGGTTCGTGTGAACTTTCCGTCCCTCTCAATGCCAATGGTAAGTTTGTTCAACTCCTAACGTGGTATACGCTTGTACTTTCTATTCGTACCATGATGT TTAACCAGACATACTTTTTGACAGAACATTTCCACTCCGAAAGGCCGCACCGTGAAGCGTACGCAACGATTCTCCACTCGGCGCAGATGTACGTATGCGG AGCCATTGTAGCAGCTCAAAGCATTCGCAGAGCAGGCTCAACTCGAGATCTAGTGATCCTCGTGGACGAAACAATCAGCAAATACCACAGAGGAGGCCTC GAATCGGCCGGATGGAAAGTCTACACAATCCAACGAATCCGGAACCCAAAGGCCGAACGAGACGCCTACAACGAATTTAACTACAGCAAATTCCGTCTCT GGCAATTAACCGACTACGACAAGATCATCTTCATCGACGCTGACATGCTCATACTGCGAAACATTGACTTCCTCTTCGAAATGCCCGAAATCACCGCCAC AGGAAACGACGGCACCCTATTCAACTCCGGGGTGATGGTCATTGAGCCGTCAAACTGCACTTTCGAGCTCCTCATGGATCACATCAACGACATCGTGTCC TACAACGGAGGAGACCAGGGCTACCTCAACGAGATCTTCACGTGGTGGCACCGGATCCCGAAGCACATGAACTTCCTGAAACACTTCTGGGAAGGCGATC CGGATGAGATCAAACAGAAGAAAATCCGTCTCTTCGGAGCAGATCCTCCGATCCTCTACGTGCTCCATTACTTGGGAACCAAGCCATGGCTGTGCTTCCG GGATTACGACTGCAACTGGAACGTCGATATACTACAGGAGTTTGCGAGCGATGTCGCACATAAGACTTGGTGGAAGGTGCACGACGAGATGCCGGAGAAC CTGCAGAAGTACTGTCTTCTCAGGTCGAAGCAGAAGGCGGCGTTGGAGTGGGATAGGAGGCAGGCGGAGAAAGGGAACTTTAGCGACGGACATTGGGGGA TTACGATTAAGGACGAGAGGTTGACGACTTGTTTCGAGGAGTTCTGCTATTGGGAAAGTATGCTGTGGCATTGGGGTGAGAAGAACTGGACTGATAATGC TACTACTACTGTCAGTTTGACTGCTCCTATAGTGGCGAATAATAATGTTACTGGTCAGTCTCTGGCTTCTCTGTGA
AA sequence Show only first row Show all	>Lus10028623 pacid=23164490 polypeptide=Lus10028623 locus=Lus10028623.g ID=Lus10028623.BGIv1.0 annot-version=v1.0 MPAGVAGTSGGSGATSPNSVEHRHRLSSSLSMGEDSPRRRFLRGRNFRDVEKAFHVPAQYRSLNCKTSTLKFVLLIIALGTLVTLYRSPAVHVADYPHHL ETQSSLRWIEEDVAVDPRYISTAEVDWDTVSNIFEKLDDTDQYQGIGLLNFNSSEVKTWKHFLPDVDHVVLQLDHVQKNVTWESLYPEWIDEEEDFKVPT CPLVPKIKFGGKPRIDVLAVKLPCNKSGGWSRDVASLHLQLAAASLASSGKSYHPVRVILITDCLPVPNLFTCKELNFREGNMWLYEPNPHRLRQKSQLP AGSCELSVPLNANGKFVQLLTWYTLVLSIRTMMFNQTYFLTEHFHSERPHREAYATILHSAQMYVCGAIVAAQSIRRAGSTRDLVILVDETISKYHRGGL ESAGWKVYTIQRIRNPKAERDAYNEFNYSKFRLWQLTDYDKIIFIDADMLILRNIDFLFEMPEITATGNDGTLFNSGVMVIEPSNCTFELLMDHINDIVS YNGGDQGYLNEIFTWWHRIPKHMNFLKHFWEGDPDEIKQKKIRLFGADPPILYVLHYLGTKPWLCFRDYDCNWNVDILQEFASDVAHKTWWKVHDEMPEN LQKYCLLRSKQKAALEWDRRQAEKGNFSDGHWGITIKDERLTTCFEEFCYWESMLWHWGEKNWTDNATTTVSLTAPIVANNNVTGQSLASL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77130		PGSIP2, GUX3	glucuronic acid substitution o...		Lus10028623 [exp]	0	1
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10029954 [exp]	4.2	0.9059
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10019701 [exp]	4.5	0.8915
AT5G13890			Family of unknown function (DU...		Lus10012588 [exp]	5.1	0.9178
AT1G34350			unknown protein		Lus10017068 [exp]	6.7	0.8944
AT2G16250			Leucine-rich repeat protein ki...		Lus10023570 [exp]	9.8	0.9034
AT5G57290			60S acidic ribosomal protein f...		Lus10010890 [exp]	11.0	0.9062
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Lus10036805 [exp]	13.9	0.8977
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10004089 [exp]	16.2	0.8896
					Lus10023559 [exp]	18.7	0.9034
AT5G06660			Protein of unknown function DU...		Lus10029308 [exp]	20.2	0.9021

Compare expression of checked genes

Lus10028623 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.