Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77122 277 / 1e-91 Uncharacterised protein family UPF0090 (.1) AT1G69210 151 / 6e-43 Uncharacterised protein family UPF0090 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018923 [exp] 552 / 0 AT1G77122 283 / 1e-93 Uncharacterised protein family UPF0090 (.1) Lus10026674 [exp] 149 / 6e-43 AT1G69210 249 / 5e-83 Uncharacterised protein family UPF0090 (.1.2) Lus10014566 [exp] 87 / 3e-20 AT1G69210 120 / 7e-34 Uncharacterised protein family UPF0090 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G071700 [exp] 304 / 2e-102 AT1G77122 271 / 6e-90 Uncharacterised protein family UPF0090 (.1) Potri.010G157300 [exp] 157 / 5e-45 AT1G69210 239 / 8e-78 Uncharacterised protein family UPF0090 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02576 [flax] [poplar] DUF150 RimP N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10028624 pacid=23164581 polypeptide=Lus10028624 locus=Lus10028624.g ID=Lus10028624.BGIv1.0 annot-version=v1.0 ATGGCATCAACAAAATTTCCGGTTTTGCCACTGAGCCACTCCCGCCGCTTCAAGGACTATCGGTTATCACTTCTCCGAGCTTCAGTCATTTCCGGAGCAA GAAATTTGAATCTCCCAGATACAGAAATGGAGACAGTTTCCCTACTAAGCGTACGAGTCTCGTCGCCGTTCTCAATTCCTCCGATCACTCTCTCAAACCG AAACTTCTCGTTCTCGTTTCCGACGTTGACTTGCCGCCCTTTCCAAGCAAGTCGCGGGAAGCTCTGCGCGGCAGTTCCGGCCAAGAAGAAGAGTAGAGAA CTGCCGCCTCAGGTGGAGGAGCCAGTCATCGACCCAAGCATATTGGAAGAGTTTTTTTCAACTGACAAGGATGACGACGAGGCAGAAGAAGAAGATGGAG AACAGCTTCTCTTTGACGACGACGAGTTTGACGATGACTTGATTGATGATGACGACGATGGTGATTTTGAAGATGAGTTTGAAGAAGAAGATGAACCGCA GCTTCAAGTTGGGGATGGCGCTGGAGGAGGAGGAATTGCCCTGGCTGGGACGTGGTGGGATAAGGAAGCTTTAGCTATAGCTGAGCAGGTTTGTCTGTCC TTCGATGGAGAACTGGGGATATATGCTTTCAAGACACTGCTAAATGGCACAATACGAGTTCGAATCGAGAGGCTTACCAATAAGTCTGGTTCTCCCAACA TGGAAGATGTTGAGGCGTTCTCTAGAACCTATAGAGCACGGCTAGATGAAGCTGAACTCGCTAAAGCTATAGCCGAGAATACTACTCTAGAGGTGTCATC TCCTGGTGTGGAGAGAGTGGTTCAGATCCCAGAAGACCTTGATCGATTCAAGGAACGGCCTATGTATGTAAAATATGTCAGCCAGGAAGAAGGGACAGAG TCTGCCTCAGAAAGTGATGGTATTTTCAAGCTTGTTTCGTTCAACTTGGAAATGAAATGTTGCACCTGGGGTATCGCAGATGTAAGGATAAACAGAGAAA AGGCAGGGAAGGGAAGACCACTTAACAAAAAGCAAAGAGAGTGGCGTCTGGATACACCTTTTGAGTCTTTGCTTCTAGTGCGCATACATTCTGAATGTTA A
AA sequence Show only first row Show all	>Lus10028624 pacid=23164581 polypeptide=Lus10028624 locus=Lus10028624.g ID=Lus10028624.BGIv1.0 annot-version=v1.0 MASTKFPVLPLSHSRRFKDYRLSLLRASVISGARNLNLPDTEMETVSLLSVRVSSPFSIPPITLSNRNFSFSFPTLTCRPFQASRGKLCAAVPAKKKSRE LPPQVEEPVIDPSILEEFFSTDKDDDEAEEEDGEQLLFDDDEFDDDLIDDDDDGDFEDEFEEEDEPQLQVGDGAGGGGIALAGTWWDKEALAIAEQVCLS FDGELGIYAFKTLLNGTIRVRIERLTNKSGSPNMEDVEAFSRTYRARLDEAELAKAIAENTTLEVSSPGVERVVQIPEDLDRFKERPMYVKYVSQEEGTE SASESDGIFKLVSFNLEMKCCTWGIADVRINREKAGKGRPLNKKQREWRLDTPFESLLLVRIHSEC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77122			Uncharacterised protein family...		Lus10028624 [exp]	0	1
AT1G73090			unknown protein		Lus10037331 [exp]	7.9	0.7294
					Lus10032317 [exp]	18.7	0.7241
AT1G10510		EMB2004	embryo defective 2004, RNI-lik...		Lus10030658 [exp]	24.9	0.7057
AT4G30720		PDE327	PIGMENT DEFECTIVE 327, FAD/NAD...		Lus10022174 [exp]	36.0	0.7024
AT1G77122			Uncharacterised protein family...		Lus10018923 [exp]	41.1	0.7012
AT2G48120		PAC	pale cress protein (PAC) (.1),...		Lus10000662 [exp]	54.2	0.6990
AT3G23580		RNR2A	ribonucleotide reductase 2A (....		Lus10004435 [exp]	84.1	0.6666
AT5G39940			FAD/NAD(P)-binding oxidoreduct...		Lus10015345 [exp]	96.1	0.6579
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10000819 [exp]	102.7	0.6271
AT3G52780		ATPAP20, PAP20	Purple acid phosphatases super...		Lus10017057 [exp]	144.8	0.6106

Compare expression of checked genes

Lus10028624 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.