Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42240 684 / 0 SCPL42 serine carboxypeptidase-like 42 (.1) AT1G43780 656 / 0 SCPL44 serine carboxypeptidase-like 44 (.1) AT5G42230 630 / 0 SCPL41 serine carboxypeptidase-like 41 (.1) AT2G12480 590 / 0 SCPL43 serine carboxypeptidase-like 43 (.1.2) AT2G33530 420 / 4e-144 SCPL46 serine carboxypeptidase-like 46 (.1) AT1G28110 409 / 7e-140 SCPL45 serine carboxypeptidase-like 45 (.1.2) AT3G02110 345 / 1e-114 SCPL25 serine carboxypeptidase-like 25 (.1) AT3G63470 346 / 2e-114 SCPL40 serine carboxypeptidase-like 40 (.1) AT5G08260 342 / 2e-113 SCPL35 serine carboxypeptidase-like 35 (.1) AT5G23210 342 / 4e-113 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018924 [exp] 903 / 0 AT5G42240 714 / 0.0 serine carboxypeptidase-like 42 (.1) Lus10016722 [exp] 389 / 1e-131 AT1G28110 688 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10036016 [exp] 388 / 6e-131 AT1G28110 690 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10042287 [exp] 377 / 4e-127 AT1G28110 598 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10013395 [exp] 362 / 3e-121 AT1G28110 534 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10040324 [exp] 354 / 5e-118 AT2G33530 532 / 0.0 serine carboxypeptidase-like 46 (.1) Lus10010331 [exp] 348 / 1e-115 AT1G28110 540 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10021856 [exp] 347 / 4e-115 AT1G28110 525 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10023446 [exp] 345 / 3e-114 AT1G28110 520 / 0.0 serine carboxypeptidase-like 45 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G071800 [exp] 708 / 0 AT5G42240 742 / 0.0 serine carboxypeptidase-like 42 (.1) Potri.005G187700 [exp] 505 / 2e-177 AT5G42240 554 / 0.0 serine carboxypeptidase-like 42 (.1) Potri.012G105500 [exp] 409 / 1e-139 AT1G28110 751 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.001G065900 [exp] 409 / 2e-139 AT1G28110 766 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.003G164000 [exp] 407 / 6e-139 AT1G28110 758 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036500 [exp] 401 / 9e-137 AT1G28110 619 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.015G104700 [exp] 379 / 4e-128 AT1G28110 715 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034400 [exp] 373 / 2e-125 AT1G28110 566 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034600 [exp] 371 / 1e-124 AT1G28110 563 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036400 [exp] 366 / 2e-122 AT2G33530 547 / 0.0 serine carboxypeptidase-like 46 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10028625 pacid=23164612 polypeptide=Lus10028625 locus=Lus10028625.g ID=Lus10028625.BGIv1.0 annot-version=v1.0 ATGGGTATTTTTAGTTTGCCTGCTGCGTTCTTGCTGGTAGCTTTCTGCAATTTTGCAGTGTTGGAAGGTTACCCAGCTGAGGATCTCGTTGTGGACTTGC CTGGCCAGCCAAAAGTTGGGTTCAAGCAGTATGCTGGGTACGTTGATGTCGATGCCAAGACTGGGAAATCCCTGTTCTATTACTTTGTTCAGGCTGAAAA AACTCCTCTAAGCAAGCCGCTCACTCTCTGGCTCAATGGAGGGCCTGGCTGCTCTTCGATTGGTGGAGGTGCATTCACGGAATTGGGTCCCTTTTACCCC AAGGGTGATGCCAAAAGCCTTAGAAGAAACAGAATGTCATGGAACAAAGCGTCGAATATGCTGTTTGTTGAATCCCCTGCTGGAGTTGGATGGTCTTACT CGAACACCAGCTCTGATTACAATACTGGAGATGCTGCTACTGCCAAGGATATGCAGGTGTTCTTACTGAACTGGTTCTCGAAGTTCCCTGAGTACAAGAC GTTGCCATTTTTCCTCACCGGAGAAAGCTATGCAGGACATTATATCCCTCAATTGGCCGAGTTACTTCTAGACCACAACGCAAAATCCAAAGGCTACAAG TTCAACTTCAAGGGTGTTGCAATTGGGAACCCACTTCTCAACCTAGACCGAGACGCCGGGTCTCCGTACCAGTTCCTGTGGTCCCATGGGATGATGTCCG ACGAGCTTCAACAGCAGATCGCCAAGGAATGCGATTTCGACGACTACACTTTCGAGAACCCTCATAATCAGTCCTTGGAATGCAATGCTGCTCTCTCGAA CGCAATGGACGTCGTTGGAGAATACGTGGATAACTACGATGTCATCCTTGATGTCTGCTATCCCTCCATATTCGAGCAGGAACTCAGACTGAAGAAAATG GCCACGAAGATGAGTGTTGGAGTTGATGTGTGCATGAGCAGTGAAAGAAGACTGTACTTCAACCTCCCTGAAGTCCAGAAGGCTCTTCATGCTAATAGAA CTAATCTTCCTTATCCATGGACGATGTGCAGCTCAAATTTGCAGTACAAGGAAACCGATGGTAACATCGACATTCTGCCAGTACTGAAGAAGATCATTCA GAATGGTATTCCAGTCTGGATTTTCAGTGGCGACCAAGATTCAGTCGTGCCATTACTCGGTTCGAGAACCCTTGTTCGCCAACTGGCCGAAGATCTCAAC TTCAAAATCACAGTTCCATACACTGCTTGGTTCCACAAAAACCAGGTTGGCGGTTGGGTGACGGAATATGGTAACCTACTGACTTTTGCAACAGTGAGAG GAGCTGCACATATGGTTCCATATTCACAGCCATCAAGGGCTCTGCATCTCTTCAGCGCGTTTCTCCGCGGGGTCAAACTGCCCGACCATCCCAGAATTTC GGAATAG
AA sequence Show only first row Show all	>Lus10028625 pacid=23164612 polypeptide=Lus10028625 locus=Lus10028625.g ID=Lus10028625.BGIv1.0 annot-version=v1.0 MGIFSLPAAFLLVAFCNFAVLEGYPAEDLVVDLPGQPKVGFKQYAGYVDVDAKTGKSLFYYFVQAEKTPLSKPLTLWLNGGPGCSSIGGGAFTELGPFYP KGDAKSLRRNRMSWNKASNMLFVESPAGVGWSYSNTSSDYNTGDAATAKDMQVFLLNWFSKFPEYKTLPFFLTGESYAGHYIPQLAELLLDHNAKSKGYK FNFKGVAIGNPLLNLDRDAGSPYQFLWSHGMMSDELQQQIAKECDFDDYTFENPHNQSLECNAALSNAMDVVGEYVDNYDVILDVCYPSIFEQELRLKKM ATKMSVGVDVCMSSERRLYFNLPEVQKALHANRTNLPYPWTMCSSNLQYKETDGNIDILPVLKKIIQNGIPVWIFSGDQDSVVPLLGSRTLVRQLAEDLN FKITVPYTAWFHKNQVGGWVTEYGNLLTFATVRGAAHMVPYSQPSRALHLFSAFLRGVKLPDHPRISE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Lus10028625 [exp]	0	1
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10041699 [exp]	4.2	0.9557
AT5G65790	MYB	AtMYB68	myb domain protein 68 (.1)		Lus10028248 [exp]	5.8	0.9565
AT5G65030			unknown protein		Lus10026049 [exp]	6.6	0.9560
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10033337 [exp]	7.4	0.9418
AT4G34890		ATXDH1	xanthine dehydrogenase 1 (.1)		Lus10034306 [exp]	9.2	0.9512
AT3G50210			2-oxoglutarate (2OG) and Fe(II...		Lus10006259 [exp]	10.5	0.9500
AT3G04970			DHHC-type zinc finger family p...		Lus10018967 [exp]	13.0	0.9422
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10031621 [exp]	16.2	0.9346
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Lus10038086 [exp]	16.4	0.9493
AT2G17080			Arabidopsis protein of unknown...		Lus10025124 [exp]	17.2	0.9428

Compare expression of checked genes

Lus10028625 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.