Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48920 41 / 0.0003 TED7 tracheary element differentiation-related 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018925 [exp] 118 / 7e-34 AT1G43790 54 / 4e-10 tracheary element differentiation-related 6 (.1) Lus10028722 [exp] 105 / 2e-26 AT2G42730 76 / 1e-14 F-box family protein (.1.2) Lus10028649 [exp] 101 / 1e-24 AT1G21380 452 / 7e-152 Target of Myb protein 1 (.1) Lus10011267 [exp] 81 / 3e-18 ND 39 / 0.002 Lus10028601 [exp] 78 / 3e-18 ND 38 / 0.001 Lus10021237 [exp] 77 / 6e-17 ND / Lus10028610 [exp] 72 / 7e-16 ND / Lus10018912 [exp] 74 / 2e-15 ND / Lus10029760 [exp] 49 / 4e-07 AT1G43790 55 / 8e-10 tracheary element differentiation-related 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G072000 [exp] 74 / 2e-16 AT1G43790 47 / 2e-07 tracheary element differentiation-related 6 (.1) Potri.007G108100 [exp] 67 / 1e-13 AT5G48920 74 / 3e-16 tracheary element differentiation-related 7 (.1) Potri.005G060700 [exp] 66 / 9e-13 AT5G48920 73 / 2e-15 tracheary element differentiation-related 7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028626 pacid=23164513 polypeptide=Lus10028626 locus=Lus10028626.g ID=Lus10028626.BGIv1.0 annot-version=v1.0 ATGAAGATCGTCGTCCTCGTGGTGTTCGTCTCGTTCGGCGGGATCTTCCTATTGGGCGGGCTCGTGGCTGCCATATGTTGCTACTTGAAGAAGATGAAGA AAGAGAAGAAGAAGACTGAGCGAGAGACGGGTATTATCCATGTGGATGATCATAGGAGGGTGAAGGAAGCCATCGACATTGGACCCCACGGCCCACGAGC CGTGGTGCTGGAGATCGACGAGGACTTGCATGTCGACGGGGTGGTGAAGAAGGACGAGGTCGTGGAGAACGTCCGCGGAGGTAAACATCACGAGCATGGT CATGGTGGAGGTGATATTACGACCGAGCTGCTGTGGGAGTCGATTTCGGATGCAGCTGAAGGCAGCAACCTAGAGCGGCTAACTCTCCGGGTTGTAGGAA GCGGCAGTAGATGCATCCTTGGGTTTATTGATGTGATTAACGTACGTTGGGATAGCATCAAAGTGGTGGAGGTTGTCGGATTTCGTGGTTATACTTTGGA CTATGAGTTTATGGAGTATGTGATAGAAAATTTTGTGGGGTTAGAAAGAATAGTGATTGATTGGTCGATTGTTCGAGTGTTTCACTGGCAAACGGTTAGA TGCAGCGAGGAACAAGGCCGTGAAGCCGAAAAGAAAGCATTGGAGCTGAAATAA
AA sequence Show only first row Show all	>Lus10028626 pacid=23164513 polypeptide=Lus10028626 locus=Lus10028626.g ID=Lus10028626.BGIv1.0 annot-version=v1.0 MKIVVLVVFVSFGGIFLLGGLVAAICCYLKKMKKEKKKTERETGIIHVDDHRRVKEAIDIGPHGPRAVVLEIDEDLHVDGVVKKDEVVENVRGGKHHEHG HGGGDITTELLWESISDAAEGSNLERLTLRVVGSGSRCILGFIDVINVRWDSIKVVEVVGFRGYTLDYEFMEYVIENFVGLERIVIDWSIVRVFHWQTVR CSEEQGREAEKKALELK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48920		TED7	tracheary element differentiat...		Lus10028626 [exp]	0	1
AT4G35350		XCP1	xylem cysteine peptidase 1 (.1...		Lus10030722 [exp]	1.0	0.9924
AT1G55180		PLDALPHA4, PLDE...	phospholipase D alpha 4 (.1)		Lus10036361 [exp]	2.4	0.9906
AT5G03260		LAC11	laccase 11 (.1)		Lus10002227 [exp]	3.5	0.9874
AT5G61750			RmlC-like cupins superfamily p...		Lus10042616 [exp]	4.5	0.9872
AT5G28950			unknown protein		Lus10025132 [exp]	5.0	0.9704
AT4G18425			Protein of unknown function (D...		Lus10013969 [exp]	5.5	0.9866
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008938 [exp]	5.5	0.9747
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10037381 [exp]	7.0	0.9861
					Lus10029977 [exp]	7.1	0.9469
AT3G62160			HXXXD-type acyl-transferase fa...		Lus10004527 [exp]	7.7	0.9864

Compare expression of checked genes

Lus10028626 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.