Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43800 570 / 0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) AT3G02630 493 / 2e-175 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) AT2G43710 492 / 1e-174 FAB2, SSI2 suppressor of SA insensitive 2, FATTY ACID BIOSYNTHESIS 2, Plant stearoyl-acyl-carrier-protein desaturase family protein (.1.2) AT5G16240 482 / 5e-171 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) AT5G16230 479 / 1e-169 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) AT3G02610 478 / 3e-169 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) AT3G02620 468 / 2e-165 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018926 [exp] 674 / 0 AT1G43800 594 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) Lus10027486 [exp] 513 / 0 AT3G02630 649 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) Lus10039241 [exp] 509 / 0 AT3G02630 645 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G187600 [exp] 579 / 0 AT1G43800 613 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) Potri.013G127300 [exp] 513 / 0 AT2G43710 696 / 0.0 suppressor of SA insensitive 2, FATTY ACID BIOSYNTHESIS 2, Plant stearoyl-acyl-carrier-protein desaturase family protein (.1.2) Potri.010G179400 [exp] 504 / 1e-179 AT3G02630 640 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) Potri.008G077900 [exp] 503 / 4e-179 AT3G02630 657 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) Potri.002G209602 [exp] 473 / 1e-167 AT3G02630 592 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) Potri.010G179500 [exp] 471 / 1e-166 AT3G02630 595 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0044 [flax] [poplar] Ferritin PF03405 [flax] [poplar] FA_desaturase_2 Fatty acid desaturase
Representative CDS sequence Show only first row Show all	>Lus10028627 pacid=23164455 polypeptide=Lus10028627 locus=Lus10028627.g ID=Lus10028627.BGIv1.0 annot-version=v1.0 ATGCACCTCTGCCCTCCACGCGCCGCCATCAAAACTGCTCCGCCGCCGCCTCCTCCGCTCGCCCTGAAACACCAACACAAAACCCACACAATGCCGGCGG AGAAAATCGAGCTTTTCAAATCCCTCGAGGATTGGGCCTCCGTCAATGTCCTCCCACTTCTCAAGCCCGTCGACAAATGCTGGCAGCCTCAGGACTTCCT CCCCGACCCGTCCCTCTCCGTCGCTGATTTCTCCGACCAGGTGAGGTTGTTGAGGGAAAGGACGGCGGAGCTACCGGACGAGTACTTCGTCGTCTTGGTG GGTGACATGATAACGGAGGATGCGTTACCGACGTACGAGACCATGATCAACACCCTTGACGGCGTTAGGGACGAGACGGGCGCCAGTCAAAGCCCATGGG CCCTGTGGACCCGAGCCTGGACCGCCGAGGAGAATCGCCACGGGGATTTGCTCCGGACCTTTCTGTACCTCTCGGGTCGGGTCGACATGAGGATGGTTGA AAAGACTGTTCAGTACCTCATTGGATCTGGCATGGACCCTGGCACGGAGAACAACCCGTACTTGGGGTTCGTATACACGTCATTCCAGGAGCGAGCCACA TTCATATCGCACGGCACCACGGCTCGGCTAGCCAAGGAGGGAGGGGATCCGGTACTTGCACGAATATGCGGCACCATAGCATCGGATGAGAAGCGACACG AGAACGCCTACACGCGCATCGTGGAGAAGCTCCTCGAGGTGGACCCGAACGGTGCGGTTTGTGCCGTGGCCGACATGATGCGTAAAAAGATCACAATGCC GGCGCACCTGATGTACGACGGGGAGGACCCAAAGCTGTTCGAGCACTTCTCGGCGGTGGCGCAGCGGCTCGGGGTGTACACGGCGCAGGACTACGCGGAC ATACTGGAGTTCTTGATCGGACGCTGGGGGCTGGACAAGGTGGAACAAGGGCTGGACGGTGAAGGGAGGCGGGCGCAGGATTTCGTGTGTGGGCTGCCGC AGAGGATCATCCGACTCCAGGAGCGAGCCGATGAGAAGGCTAAGAAGATGAAGAAGCCGGAAGCCGTCAAATTTAGCTGGATCTTCAAACGGCAAGTCGT CTTGTGA
AA sequence Show only first row Show all	>Lus10028627 pacid=23164455 polypeptide=Lus10028627 locus=Lus10028627.g ID=Lus10028627.BGIv1.0 annot-version=v1.0 MHLCPPRAAIKTAPPPPPPLALKHQHKTHTMPAEKIELFKSLEDWASVNVLPLLKPVDKCWQPQDFLPDPSLSVADFSDQVRLLRERTAELPDEYFVVLV GDMITEDALPTYETMINTLDGVRDETGASQSPWALWTRAWTAEENRHGDLLRTFLYLSGRVDMRMVEKTVQYLIGSGMDPGTENNPYLGFVYTSFQERAT FISHGTTARLAKEGGDPVLARICGTIASDEKRHENAYTRIVEKLLEVDPNGAVCAVADMMRKKITMPAHLMYDGEDPKLFEHFSAVAQRLGVYTAQDYAD ILEFLIGRWGLDKVEQGLDGEGRRAQDFVCGLPQRIIRLQERADEKAKKMKKPEAVKFSWIFKRQVVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G43800			Plant stearoyl-acyl-carrier-pr...		Lus10028627 [exp]	0	1
AT4G10265			Wound-responsive family protei...		Lus10039751 [exp]	4.8	0.9434
AT4G10265			Wound-responsive family protei...		Lus10039755 [exp]	5.8	0.9375
AT3G53270			Small nuclear RNA activating c...		Lus10008478 [exp]	8.0	0.9100
AT5G49555			FAD/NAD(P)-binding oxidoreduct...		Lus10014308 [exp]	8.7	0.9068
AT5G67020			unknown protein		Lus10019249 [exp]	9.2	0.9024
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10024049 [exp]	10.5	0.8614
AT2G03830		RGF8	root meristem growth factor 8,...		Lus10036830 [exp]	11.5	0.9227
AT4G34640		ERG9, SQS1	squalene synthase 1 (.1)		Lus10017499 [exp]	11.8	0.9251
AT5G25940			early nodulin-related (.1)		Lus10019434 [exp]	12.3	0.9293
AT1G43800			Plant stearoyl-acyl-carrier-pr...		Lus10018926 [exp]	12.5	0.9343

Compare expression of checked genes

Lus10028627 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.