Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12740 350 / 7e-117 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT4G36380 255 / 2e-79 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT1G73340 243 / 8e-75 Cytochrome P450 superfamily protein (.1) AT1G55940 243 / 2e-73 CYP708A1 "cytochrome P450, family 708, subfamily A, polypeptide 1", cytochrome P450, family 708, subfamily A, polypeptide 1 (.1) AT3G50660 233 / 8e-71 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) AT5G05690 231 / 1e-70 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT3G44970 226 / 7e-69 Cytochrome P450 superfamily protein (.1) AT5G48000 226 / 1e-68 THAH1, THAH, CYP708A2 THALIANOL HYDROXYLASE 1, THALIANOL HYDROXYLASE, "cytochrome P450, family 708, subfamily A, polypeptide 2", cytochrome P450, family 708, subfamily A, polypeptide 2 (.1.2.3.4.5) AT1G78490 226 / 1e-68 CYP708A3 "cytochrome P450, family 708, subfamily A, polypeptide 3", cytochrome P450, family 708, subfamily A, polypeptide 3 (.1) AT1G65670 223 / 2e-67 CYP702A1 "cytochrome P450, family 702, subfamily A, polypeptide 1", cytochrome P450, family 702, subfamily A, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042788 [exp] 531 / 0 AT1G12740 397 / 1e-134 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10024495 [exp] 380 / 2e-128 AT1G12740 751 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10017839 [exp] 291 / 2e-94 AT1G12740 640 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10005762 [exp] 275 / 6e-87 AT1G12740 429 / 1e-146 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10041794 [exp] 237 / 1e-72 AT4G36380 643 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10040193 [exp] 236 / 2e-72 AT5G05690 687 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10028345 [exp] 231 / 3e-70 AT4G36380 652 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10031295 [exp] 228 / 5e-69 AT1G73340 624 / 0.0 Cytochrome P450 superfamily protein (.1) Lus10014850 [exp] 226 / 1e-68 AT5G05690 679 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G204100 [exp] 389 / 1e-131 AT1G12740 468 / 9e-163 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G109100 [exp] 386 / 9e-131 AT1G12740 770 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.003G122500 [exp] 384 / 7e-130 AT1G12740 770 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.009G064900 [exp] 384 / 8e-130 AT1G12740 477 / 5e-166 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270800 [exp] 381 / 8e-129 AT1G12740 488 / 2e-170 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270700 [exp] 379 / 4e-128 AT1G12740 455 / 1e-157 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270300 [exp] 379 / 6e-128 AT1G12740 437 / 2e-150 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270404 [exp] 374 / 4e-126 AT1G12740 443 / 9e-153 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270500 [exp] 374 / 7e-126 AT1G12740 443 / 1e-152 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270600 [exp] 373 / 8e-126 AT1G12740 441 / 5e-152 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10028628 pacid=23164561 polypeptide=Lus10028628 locus=Lus10028628.g ID=Lus10028628.BGIv1.0 annot-version=v1.0 ATGGGGTGGCCGGTGATTGGTGAGACGTTCTCGTTCTTCGCATCCAACAACTCCATCGACGTCCAGCCTTTCCTGTCCACCCGGACCCGAAAGCACGGCA AGATATTCAAGACCAGCCTGGCGGGCCGGAAAGTGGTGGTGTCGTCCGACCCGGATTTCAACCACTACATACTCCAGCAGGAAGGCAAGCTCGTGGAGCT TTGGTACCTGGATTCTTTCGCCGAGATCATCGGCCAGAACGGCACGTCGTTGAAGGAGGCTTGGAATGCTAAGGAGCTCCACCGGAGCTTGAAGAAGACG GTGTATGATCATATCGGAGTCGAGAGCTTGAGATTGGGCTTGCTGGCCCGAATGGAGGATGTCGTGGGTCGGACTTTGGATCGGTGGGCTTCGGGTCGGG TCGTTGAAGTCAAACACGGCTGCTCTCAGATGGTGATGGACTTGAGTTCGAACATAATGTTTGGTTACGACCCGTTGAAGTACCACGACCTTAACCTATG CGACATGTTCGCTAGCTTCACCCGCGGCCTACTCTCCTTCCCTCTCAAGATTCCTGGCACCACTTTTTACTCCTGCTTGCAAAGCCAGAAGAAGATACTG AAGATCGTAACGGACGCGATAGAGGAGAGACGACAACGTCGTTTGGAGGCGGAAACAAAAAGTTCTCTGTATCCAAACGACGATTATGATTTGCTTGATC AGCTGATTGATGATGCCGAATCGAAAGGGTTTCCAGACGATAAGGGCATAAGTTACTTGATCTTCGGTCTCTTATTCGCCAATGTAGAGACGATCCCTAG TGTCTTAACACTTGCTGTCAGCTTCCTCACGGATCATCCTCTTGTCTTAGACCAACTTGTGAACGAAAATGAAGAAGTCCTTCGTAGCAGAGGAGGCCGT ACAGAACATGGTTTGACATGGAAGGAATATAAGTCCATGAATTTCACCATGAACGTAATCAACGAAGCGCTTCGAATCAACGGTTCGGTGGGGATCCTAC GGCGCACGATCAATGACGTCAACGTAAATGGGTATGTGATTCCAAAAGGATGGACGATAGCAGTGATGCCAACGGCAGTTCACATGGATTCGGATTTGTA CGAGGATCCTCTTTCTTTCAATCCTTCGAGATGGAAGGAGATAGGAGCCAGTGCTAGCACTAAAAACTTCATACCGTTTGGAGGAGGGATGAGGACATGT GTAGGAGCTGAGTATAGCAAAGCCCTAATGGCAGTCTTTCTACATCTCCTAGTTACCAAATACAGTTGGAAGAAGGTGAAAGGAGGGAGAATTTACAGAG CTCCAACTCTACAGTTTGGAGATGGTTACCATATTCAACTCTTCAAGAAAACATGA
AA sequence Show only first row Show all	>Lus10028628 pacid=23164561 polypeptide=Lus10028628 locus=Lus10028628.g ID=Lus10028628.BGIv1.0 annot-version=v1.0 MGWPVIGETFSFFASNNSIDVQPFLSTRTRKHGKIFKTSLAGRKVVVSSDPDFNHYILQQEGKLVELWYLDSFAEIIGQNGTSLKEAWNAKELHRSLKKT VYDHIGVESLRLGLLARMEDVVGRTLDRWASGRVVEVKHGCSQMVMDLSSNIMFGYDPLKYHDLNLCDMFASFTRGLLSFPLKIPGTTFYSCLQSQKKIL KIVTDAIEERRQRRLEAETKSSLYPNDDYDLLDQLIDDAESKGFPDDKGISYLIFGLLFANVETIPSVLTLAVSFLTDHPLVLDQLVNENEEVLRSRGGR TEHGLTWKEYKSMNFTMNVINEALRINGSVGILRRTINDVNVNGYVIPKGWTIAVMPTAVHMDSDLYEDPLSFNPSRWKEIGASASTKNFIPFGGGMRTC VGAEYSKALMAVFLHLLVTKYSWKKVKGGRIYRAPTLQFGDGYHIQLFKKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10028628 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Lus10004388 [exp]	3.9	0.8771
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10027146 [exp]	5.1	0.8244
AT5G05340			Peroxidase superfamily protein...		Lus10003573 [exp]	6.3	0.8635
AT4G27290			S-locus lectin protein kinase ...		Lus10014813 [exp]	8.5	0.8624
AT5G22860			Serine carboxypeptidase S28 fa...		Lus10005354 [exp]	9.8	0.8544
AT3G47570			Leucine-rich repeat protein ki...		Lus10030847 [exp]	11.3	0.8447
AT5G05340			Peroxidase superfamily protein...		Lus10032786 [exp]	11.4	0.8493
AT4G39830			Cupredoxin superfamily protein...		Lus10000871 [exp]	13.0	0.7771
AT3G47570			Leucine-rich repeat protein ki...		Lus10016896 [exp]	13.2	0.8469
					Lus10021406 [exp]	14.5	0.8487

Compare expression of checked genes

Lus10028628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.