Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02680 162 / 9e-53 TAF13 TBP-associated factor 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018927 [exp] 225 / 4e-77 AT1G02680 159 / 2e-51 TBP-associated factor 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G122500 [exp] 182 / 2e-60 AT1G02680 169 / 2e-55 TBP-associated factor 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF02269 [flax] [poplar] TFIID-18kDa Transcription initiation factor IID, 18kD subunit
Representative CDS sequence Show only first row Show all	>Lus10028629 pacid=23164602 polypeptide=Lus10028629 locus=Lus10028629.g ID=Lus10028629.BGIv1.0 annot-version=v1.0 ATGAGCGGCTCCGGAACTCCTGGACAGGCACCCAAATCCTCAAAGGTCGCTGGCGCTTCGTCACACTCGTCGGAACCTTTTACTAAGAGGAAACGAGGAG TCTTCCAGAAAGATTTGCAGCATATGATGTATGGATTTGGAGACGATCCTAATCCGCTTCCGGAAAGTTTAGCACTCCTGGAGGACATTGTTGTAGAGTA TGTCACTGATCTGACACATAAAGCACTTGACGTTGGATCGAAAAGGGCGAGAATTTCAGTCGAGGATTTCCTGTACTTGATTCGCAAGGACCCACCAAAG CTCAACCGATGTACGGAACTGCTTTCGATGCAAGAGGAGCTGAAACAAGCAAGGAAAGCTTTCGACATGGATGACGAGAAACGGGTACTCGAGTAA
AA sequence Show only first row Show all	>Lus10028629 pacid=23164602 polypeptide=Lus10028629 locus=Lus10028629.g ID=Lus10028629.BGIv1.0 annot-version=v1.0 MSGSGTPGQAPKSSKVAGASSHSSEPFTKRKRGVFQKDLQHMMYGFGDDPNPLPESLALLEDIVVEYVTDLTHKALDVGSKRARISVEDFLYLIRKDPPK LNRCTELLSMQEELKQARKAFDMDDEKRVLE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02680		TAF13	TBP-associated factor 13 (.1)		Lus10028629 [exp]	0	1
AT1G32310			unknown protein		Lus10030955 [exp]	1.7	0.9286
AT1G63855			Putative methyltransferase fam...		Lus10041869 [exp]	1.7	0.9058
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Lus10019259 [exp]	4.0	0.9045
AT1G55160			unknown protein		Lus10011503 [exp]	6.8	0.9136
AT3G01980			NAD(P)-binding Rossmann-fold s...		Lus10041545 [exp]	8.9	0.9000
AT2G36410			Family of unknown function (DU...		Lus10035563 [exp]	15.9	0.8672
AT4G22740			glycine-rich protein (.1.2)		Lus10024563 [exp]	16.9	0.8813
AT2G20140		RPT2b	regulatory particle AAA-ATPase...		Lus10015524 [exp]	18.1	0.8959
AT1G11740			ankyrin repeat family protein ...		Lus10020036 [exp]	20.8	0.8814
AT4G27745			Yippee family putative zinc-bi...		Lus10033226 [exp]	21.1	0.8678

Compare expression of checked genes

Lus10028629 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.