Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77100 327 / 2e-111 Peroxidase superfamily protein (.1) AT4G25980 316 / 1e-106 Peroxidase superfamily protein (.1) AT2G41480 265 / 5e-87 Peroxidase superfamily protein (.1) AT5G39580 249 / 5e-81 Peroxidase superfamily protein (.1.2) AT5G64120 249 / 5e-81 Peroxidase superfamily protein (.1) AT5G19880 225 / 7e-72 Peroxidase superfamily protein (.1) AT5G06730 221 / 1e-69 Peroxidase superfamily protein (.1) AT5G64110 214 / 2e-67 Peroxidase superfamily protein (.1) AT1G05260 213 / 4e-67 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT2G24800 213 / 8e-67 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018929 [exp] 538 / 0 AT1G77100 318 / 2e-107 Peroxidase superfamily protein (.1) Lus10015555 [exp] 259 / 3e-85 AT2G41480 432 / 9e-153 Peroxidase superfamily protein (.1) Lus10007051 [exp] 258 / 9e-85 AT2G41480 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10007052 [exp] 252 / 4e-82 AT2G41480 400 / 1e-140 Peroxidase superfamily protein (.1) Lus10012684 [exp] 244 / 2e-79 AT2G41480 395 / 2e-138 Peroxidase superfamily protein (.1) Lus10020826 [exp] 235 / 1e-75 AT2G41480 375 / 1e-130 Peroxidase superfamily protein (.1) Lus10020097 [exp] 216 / 4e-68 AT2G24800 412 / 3e-145 Peroxidase superfamily protein (.1) Lus10008174 [exp] 216 / 6e-68 AT5G06730 382 / 2e-132 Peroxidase superfamily protein (.1) Lus10028736 [exp] 212 / 6e-67 AT1G05260 266 / 4e-88 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G069600 [exp] 261 / 7e-86 AT2G41480 498 / 6e-179 Peroxidase superfamily protein (.1) Potri.016G125000 [exp] 250 / 2e-81 AT2G41480 419 / 7e-148 Peroxidase superfamily protein (.1) Potri.018G131600 [exp] 246 / 5e-80 AT2G41480 478 / 4e-171 Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 226 / 4e-72 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.018G015500 [exp] 226 / 7e-72 AT2G24800 416 / 2e-146 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 225 / 1e-71 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.006G267400 [exp] 223 / 1e-70 AT2G24800 409 / 1e-143 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 222 / 1e-70 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 222 / 1e-70 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 222 / 1e-70 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10028631 pacid=23164591 polypeptide=Lus10028631 locus=Lus10028631.g ID=Lus10028631.BGIv1.0 annot-version=v1.0 ATGCTCTGTTTCACTTCCAACCCTCTGTTTCTCTCCTTCTTCTTCCTCTTCCTCCTCCAAGCATCAAATGGTCAGCTCCAGTTCGGCTTCTACGCCAACT CCTGCCCTGCCGCCGAGCAAGTCGTCTTCAATGCAGTCCAGCAAGCCAGCCTCTCCGAACCCCGCACCGCCGCCCGCCTCCTCCGCCTCTCCTTCCATGA CTGCTTCGTCGAGGGTTGTGACGGCTCCATATTGCTGAACGGAGGGGAACAGACTGCGTCTGGGAATCAAGGGCTGGGATCGTTTGAGGTGATCGAAACG GCTAAAGAACGGCTGGAAAGATTGTGCCCTGGAGTCGTCTCTTGCGCGGACATTGTGGCTTTAGCTGCTCGTGACGCCATTACCTTGAGTCATGGGCCAG TTTTTAACATTCCAACGGGGAGAAGAGACGGCAGAGTTAACGATGTTAAAAATGCTGCCAGTTTGCCGGACGTCAACGATTCCGCCGATGATATGAGCGA CAAGTTCCGTCAGAAAGGATTGTCCGTTAAAGATCTCGTCCTTCTCACCGCAGGAGGGCACACAATTGGGACGACGGCGTGTTTCTTCATGACGGATCGG CTCTACCAATTCAGACCTCCGACGACCATGACCGACCCGACCATTAACCCGGTTCTCTTGCGGGAGCTGGAAAGGATGTGCCCGAAAGGGGGCGACGTCA ATGACCGAGTGCGTATGGACTGGTCGACACCGGACGCGATGGACGACAAGATCATTCGCAACATCCAGAGGGGGTTCGCAGTGCTGGCATCCGACGCAAG GCTGGCAGATAACCGGGAGGCAGTCGATATTATGAATTCTTACTTGAGTACCAACAATGCGACGGCGTTTATCTTCGACTTTGCCGAGGCCATGGTGAAA ATGGGGACAATGGCTGTTAAAACGAGGACCCAAGGTGAAATCAGGAGGAAATGCAACGTGGTTAATTAA
AA sequence Show only first row Show all	>Lus10028631 pacid=23164591 polypeptide=Lus10028631 locus=Lus10028631.g ID=Lus10028631.BGIv1.0 annot-version=v1.0 MLCFTSNPLFLSFFFLFLLQASNGQLQFGFYANSCPAAEQVVFNAVQQASLSEPRTAARLLRLSFHDCFVEGCDGSILLNGGEQTASGNQGLGSFEVIET AKERLERLCPGVVSCADIVALAARDAITLSHGPVFNIPTGRRDGRVNDVKNAASLPDVNDSADDMSDKFRQKGLSVKDLVLLTAGGHTIGTTACFFMTDR LYQFRPPTTMTDPTINPVLLRELERMCPKGGDVNDRVRMDWSTPDAMDDKIIRNIQRGFAVLASDARLADNREAVDIMNSYLSTNNATAFIFDFAEAMVK MGTMAVKTRTQGEIRRKCNVVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77100			Peroxidase superfamily protein...		Lus10028631 [exp]	0	1
AT1G14550			Peroxidase superfamily protein...		Lus10009899 [exp]	1.0	0.9053
AT1G29860	WRKY	ATWRKY71, WRKY7...	WRKY DNA-binding protein 71 (....		Lus10007326 [exp]	6.3	0.8561
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10013327 [exp]	16.2	0.8469
AT1G20870			HSP20-like chaperones superfam...		Lus10018368 [exp]	18.8	0.8987
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10012494 [exp]	25.4	0.8174
AT4G01630		ATEXP17, ATHEXP...	EXPANSIN 17, expansin A17 (.1)		Lus10038013 [exp]	27.6	0.8654
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10032654 [exp]	37.8	0.8597
AT3G48990			AMP-dependent synthetase and l...		Lus10039232 [exp]	44.4	0.8374
AT5G02260		ATHEXPALPHA1.10...	expansin A9 (.1)		Lus10023902 [exp]	52.0	0.8505
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10000326 [exp]	62.8	0.8136

Compare expression of checked genes

Lus10028631 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.