Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21480 682 / 0 Exostosin family protein (.1.2) AT5G22940 89 / 9e-19 F8H FRA8 homolog (.1) AT5G16890 88 / 2e-18 Exostosin family protein (.1) AT2G35100 87 / 4e-18 ARAD1 ARABINAN DEFICIENT 1, Exostosin family protein (.1) AT4G38040 81 / 2e-16 Exostosin family protein (.1) AT5G25310 81 / 5e-16 Exostosin family protein (.1) AT5G33290 79 / 2e-15 XGD1 xylogalacturonan deficient 1 (.1) AT4G32790 79 / 2e-15 Exostosin family protein (.1) AT5G19670 78 / 4e-15 Exostosin family protein (.1) AT5G44930 77 / 4e-15 ARAD2 ARABINAN DEFICIENT 2, Exostosin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018930 [exp] 693 / 0 AT1G21480 612 / 0.0 Exostosin family protein (.1.2) Lus10011121 [exp] 89 / 7e-19 AT5G19670 730 / 0.0 Exostosin family protein (.1) Lus10036219 [exp] 88 / 3e-18 AT2G35100 611 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Lus10038355 [exp] 87 / 4e-18 AT2G35100 605 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Lus10043239 [exp] 86 / 2e-17 AT5G19670 748 / 0.0 Exostosin family protein (.1) Lus10041343 [exp] 84 / 4e-17 AT2G28110 608 / 0.0 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) Lus10013787 [exp] 84 / 5e-17 AT5G16890 673 / 0.0 Exostosin family protein (.1) Lus10039145 [exp] 82 / 1e-16 AT5G16890 679 / 0.0 Exostosin family protein (.1) Lus10012973 [exp] 81 / 4e-16 AT5G19670 716 / 0.0 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G187400 [exp] 743 / 0 AT1G21480 714 / 0.0 Exostosin family protein (.1.2) Potri.002G072300 [exp] 734 / 0 AT1G21480 695 / 0.0 Exostosin family protein (.1.2) Potri.009G006500 [exp] 92 / 7e-20 AT2G28110 596 / 0.0 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) Potri.019G049800 [exp] 91 / 3e-19 AT5G16890 693 / 0.0 Exostosin family protein (.1) Potri.015G124800 [exp] 87 / 5e-18 AT2G35100 581 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.012G124600 [exp] 84 / 3e-17 AT2G35100 604 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.003G162000 [exp] 81 / 2e-16 AT1G27440 705 / 0.0 Exostosin family protein (.1) Potri.012G109200 [exp] 79 / 9e-16 AT5G61840 752 / 0.0 Exostosin family protein (.1) Potri.012G109600 [exp] 79 / 9e-16 AT5G61840 750 / 0.0 Exostosin family protein (.1) Potri.008G034500 [exp] 79 / 1e-15 AT1G67410 557 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10028632 pacid=23164555 polypeptide=Lus10028632 locus=Lus10028632.g ID=Lus10028632.BGIv1.0 annot-version=v1.0 ATGGCGGGGAGCTTAACTAATAAGCCGCCGCCGACGAGAGTCTTCTCCGCACACCACGGCAATACTACGCCGTGCACCCGCGTTCACCAGATCGGCGCAC TTCTCCTCGTCGCCGCCACTTATTTCCTCACTCGCCTCTTCCACGACTCACTCTCTCCCTGCGTCTCTTCCATCGGCGGCGGGGGAGACCTCATCTCCCG GAGCCTCGTCCATGTCTCCGACTCCGGGCAACTGTTCTGGCCCGATCGTGGCTACGGCACAGTCCTCTCCGTCAAGATCTACGTCTACGAGGAGAGTGAG ATCGACGGTTTGAAAGAGCTAATGCGCGGCCGTGAAGGGAAAATCACTGCGGAAGCTTGCGTCAAAGGCCAGTGGGGCACTCAGGTTAAGATACACAAGT TGCTATTGAAATCGAGATTCCGGACTAAGAAGAAAGAGGATGCGGATTTGTTCTTCGTGCCGACGTACGTGAAATGTGTTCGGATGATGGGAGGGCTTAC TGATAAAGAAATCAACCAAACATTCGTTAGAGTCTTGAGCCAAATGCCTTACTTCAGAAGATCTGGAGGTCGGGATCACATTTTCGTATTCCCCAGTGGA GCAGGAGCTCACTTGTTTCGATCGTGGGCTACGTTCATTAATCGTTCCATAATCCTTACACCAGAGGGTGACCGAACTGATAAGAAGGATACAACTGCGT TCAATACGTGGAAAGATATAATCATCCCTGGAAATGTCGAAGATGGAATGACTATAAGAAAACCTACGACAGTCGAGCCTTTGCCTTTGTCCAAGAGGAA GTACTTGGCGAATTATCTAGGTCGAGCACAGGGAAAAGCTGGCCGTCTTAAGCTCATCGAGCTTTCAAATCAGTATCCAGATAAGCTGGAATGTCCAGAC CTGAAGTTCAGCGGATCTGATAAATTCGGCAGGGCTGAATACTTCGAACACCTGCGCAATGCAAAGTTCTGTCTAGCCCCACGCGGCGAATCTTCCTGGA CCCTTCGCTTTTACGAATCCTTCTTTGTGGAGTGTGTACCAGTTATTTTATCCGACCAGGCAGAGTTCCCTTTCCAAAACGTGATTGACTACACCCAGAT ATCGATCAAATGGCCATCCACACGAATCGGCCTCGAACTTCTGGAATACCTCGAGTCCATACCAGAGGAGGAGATCGAGAGGATGATAGCGAACGGTAGG AGGATAAGGTGCTTGTGGATGTATGGATCGGAGTCCGAGCCGTGTTCGACGATGCTCGGAGTCATGTGGGAACTTCAGAGGAAAGTGAGGCAGTTCCACC AGTCGCACGAAACGTTCTGGCTTCACAATCGAACGGTAGTGAACCGGAATCTGGTCGAGTTCTCGAAATGGGAGCCTCCCATGTCTCTTCCCTGA
AA sequence Show only first row Show all	>Lus10028632 pacid=23164555 polypeptide=Lus10028632 locus=Lus10028632.g ID=Lus10028632.BGIv1.0 annot-version=v1.0 MAGSLTNKPPPTRVFSAHHGNTTPCTRVHQIGALLLVAATYFLTRLFHDSLSPCVSSIGGGGDLISRSLVHVSDSGQLFWPDRGYGTVLSVKIYVYEESE IDGLKELMRGREGKITAEACVKGQWGTQVKIHKLLLKSRFRTKKKEDADLFFVPTYVKCVRMMGGLTDKEINQTFVRVLSQMPYFRRSGGRDHIFVFPSG AGAHLFRSWATFINRSIILTPEGDRTDKKDTTAFNTWKDIIIPGNVEDGMTIRKPTTVEPLPLSKRKYLANYLGRAQGKAGRLKLIELSNQYPDKLECPD LKFSGSDKFGRAEYFEHLRNAKFCLAPRGESSWTLRFYESFFVECVPVILSDQAEFPFQNVIDYTQISIKWPSTRIGLELLEYLESIPEEEIERMIANGR RIRCLWMYGSESEPCSTMLGVMWELQRKVRQFHQSHETFWLHNRTVVNRNLVEFSKWEPPMSLP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21480			Exostosin family protein (.1.2...		Lus10028632 [exp]	0	1
AT1G23170			Protein of unknown function DU...		Lus10021774 [exp]	3.2	0.9357
AT1G65900			unknown protein		Lus10007381 [exp]	4.9	0.9406
AT1G21480			Exostosin family protein (.1.2...		Lus10018930 [exp]	5.2	0.9300
AT3G53110		LOS4	LOW EXPRESSION OF OSMOTICALLY ...		Lus10014393 [exp]	9.5	0.9151
AT4G22930		PYR4, DHOASE	DIHYDROOROTASE, pyrimidin 4 (....		Lus10033681 [exp]	10.0	0.9048
AT1G80620			S15/NS1, RNA-binding protein (...		Lus10009249 [exp]	11.5	0.9193
AT4G24490		ATRGTA1	RAB geranylgeranyl transferase...		Lus10001518 [exp]	12.0	0.9091
AT2G41310		ARR8, ATRR3	RESPONSE REGULATOR 8, response...		Lus10007885 [exp]	14.5	0.9058
AT5G19050			alpha/beta-Hydrolases superfam...		Lus10034026 [exp]	14.7	0.8918
AT5G41940			Ypt/Rab-GAP domain of gyp1p su...		Lus10023237 [exp]	17.7	0.8972

Compare expression of checked genes

Lus10028632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.