Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77090 348 / 3e-122 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) AT3G56650 85 / 2e-19 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) AT2G39470 45 / 1e-05 PnsL1, PPL2 Photosynthetic NDH subcomplex L 1, PsbP-like protein 2 (.1.2.3) AT3G63540 44 / 1e-05 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) AT3G55330 43 / 7e-05 PPL1 PsbP-like protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018931 [exp] 482 / 4e-175 AT1G77090 359 / 1e-126 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10042812 [exp] 88 / 1e-20 AT3G56650 346 / 3e-121 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10029785 [exp] 88 / 2e-20 AT3G56650 343 / 4e-120 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10016419 [exp] 59 / 4e-10 AT3G63540 243 / 1e-82 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10023436 [exp] 52 / 6e-08 AT2G39470 255 / 3e-86 Photosynthetic NDH subcomplex L 1, PsbP-like protein 2 (.1.2.3) Lus10040314 [exp] 52 / 7e-08 AT2G39470 254 / 5e-86 Photosynthetic NDH subcomplex L 1, PsbP-like protein 2 (.1.2.3) Lus10030326 [exp] 42 / 0.0003 AT3G55330 268 / 7e-91 PsbP-like protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G072400 [exp] 361 / 6e-127 AT1G77090 345 / 2e-120 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Potri.006G034300 [exp] 86 / 1e-19 AT3G56650 372 / 1e-130 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Potri.010G210000 [exp] 50 / 4e-07 AT2G39470 278 / 3e-95 Photosynthetic NDH subcomplex L 1, PsbP-like protein 2 (.1.2.3) Potri.009G062500 [exp] 49 / 7e-07 AT3G63540 240 / 1e-81 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Potri.010G210200 [exp] 40 / 0.001 AT3G55330 299 / 2e-103 PsbP-like protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0619 [flax] [poplar] Mog1p_PsbP PF01789 [flax] [poplar] PsbP PsbP
Representative CDS sequence Show only first row Show all	>Lus10028633 pacid=23164458 polypeptide=Lus10028633 locus=Lus10028633.g ID=Lus10028633.BGIv1.0 annot-version=v1.0 ATGGGTACAACGAGCTTATTCACAGTATCCAGCTTCCCGCCGGTAACCTGCAGCAGAGCTCACCACCGCCGGCGATTAGTTCCTCAAGCTCATTCCGATG GATTCGTGGAAAAAACCGGAAGAAGATCGGTTCTGGGAACAGGGGCTTTCTTAATTTGGTCGATTAATGGCGGCGGGGATGGGATCGCAGTAGTGAAACA GGGGCTTTTGGCCGGGAGGATACCCGGCTTATCCGAGCCTGATGAACAAGGTTGGAGGACATACAGAAGGCCAGATGAGAAGTCTGGAGGGCACGGTGTT GGATGGAGTCCCATCATTCCTTATGCCTTCTCTGTGCCTCAAGAATGGGAAGAGGTTCCAGTATCAATAGCAGACCTGGGAGGGACAGAGATCGATTTGA GATTCGCAAGCTCGAAGGAAGGACGTGCGTTTGTCATTGTTGCTCCGGTTCTCCGATTCGCAGATAATTTGGGCGACAACGTTAGGATCGAGCAAATCGG GACGCCCGAGAAGGTGATCAACGCTTTCGGGCCAGAAGTGGTGGGGGAGAACGTGGAAGGGAAAGTTCGGAGCATGAGCGTAGAGGAACACGAAGGAAGG ACTTACTACCAGTTCGAGCTTGAGCCACCTCACGTACTGATCACCGCAACTGCAGCCGGGAACCGCCTTTACTTGTTCAATGTCACTGCAAACAGTCTTC AATGGAAGAGGCATTTCCAGGATTTGAAGAAGATTGCCGACTCCTTTCGTGTTGTCTAA
AA sequence Show only first row Show all	>Lus10028633 pacid=23164458 polypeptide=Lus10028633 locus=Lus10028633.g ID=Lus10028633.BGIv1.0 annot-version=v1.0 MGTTSLFTVSSFPPVTCSRAHHRRRLVPQAHSDGFVEKTGRRSVLGTGAFLIWSINGGGDGIAVVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGV GWSPIIPYAFSVPQEWEEVPVSIADLGGTEIDLRFASSKEGRAFVIVAPVLRFADNLGDNVRIEQIGTPEKVINAFGPEVVGENVEGKVRSMSVEEHEGR TYYQFELEPPHVLITATAAGNRLYLFNVTANSLQWKRHFQDLKKIADSFRVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77090			Mog1/PsbP/DUF1795-like photosy...		Lus10028633 [exp]	0	1
AT2G37240			Thioredoxin superfamily protei...		Lus10014017 [exp]	1.0	0.9594
AT2G05620		PGR5	proton gradient regulation 5 (...		Lus10011777 [exp]	2.4	0.9450
AT1G53670		MSRB1, ATMSRB1	methionine sulfoxide reductase...		Lus10005593 [exp]	2.8	0.9224
AT4G37200		HCF164	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10022477 [exp]	4.5	0.9342
AT5G11840			Protein of unknown function (D...		Lus10027492 [exp]	4.6	0.9232
AT5G57345			unknown protein		Lus10001632 [exp]	5.2	0.9356
AT2G35490			Plastid-lipid associated prote...		Lus10030987 [exp]	6.6	0.9179
AT5G20190			Tetratricopeptide repeat (TPR)...		Lus10030103 [exp]	6.7	0.9154
AT4G00895			ATPase, F1 complex, OSCP/delta...		Lus10012618 [exp]	7.1	0.9259
AT1G06040	CO	BBX24, STO	SALT TOLERANCE, B-box domain p...		Lus10025579 [exp]	9.2	0.9247

Compare expression of checked genes

Lus10028633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.