Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21460 316 / 1e-109 SWEET1, AtSWEET1 Nodulin MtN3 family protein (.1) AT4G10850 174 / 2e-53 SWEET7, AtSWEET7 Nodulin MtN3 family protein (.1) AT5G53190 171 / 2e-52 SWEET3, AtSWEET3 Nodulin MtN3 family protein (.1) AT5G62850 169 / 7e-52 ATVEX1, SWEET5, AtSWEET5 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) AT1G66770 167 / 4e-51 SWEET6, AtSWEET6 Nodulin MtN3 family protein (.1) AT3G14770 159 / 2e-48 SWEET2, AtSWEET2 Nodulin MtN3 family protein (.1) AT5G40260 143 / 7e-42 SWEET8, AtSWEET8 Nodulin MtN3 family protein (.1.2) AT3G16690 142 / 9e-42 SWEET16, AtSWEET16 Nodulin MtN3 family protein (.1) AT4G15920 141 / 5e-41 SWEET17, AtSWEET17 Nodulin MtN3 family protein (.1) AT3G28007 136 / 3e-39 SWEET4, AtSWEET4 Nodulin MtN3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018932 [exp] 389 / 2e-138 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1) Lus10011990 [exp] 176 / 7e-55 AT3G14770 268 / 5e-91 Nodulin MtN3 family protein (.1) Lus10014932 [exp] 173 / 3e-53 AT5G53190 295 / 6e-101 Nodulin MtN3 family protein (.1) Lus10015245 [exp] 170 / 4e-52 AT3G14770 269 / 3e-91 Nodulin MtN3 family protein (.1) Lus10005411 [exp] 169 / 6e-52 AT3G14770 258 / 2e-87 Nodulin MtN3 family protein (.1) Lus10034880 [exp] 163 / 2e-49 AT5G62850 291 / 5e-100 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10033416 [exp] 152 / 3e-45 AT5G62850 283 / 8e-97 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10002364 [exp] 152 / 4e-45 AT5G62850 268 / 7e-91 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10002783 [exp] 151 / 5e-44 AT3G14770 226 / 4e-73 Nodulin MtN3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G187300 [exp] 308 / 2e-106 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1) Potri.002G072700 [exp] 281 / 8e-96 AT1G21460 345 / 5e-121 Nodulin MtN3 family protein (.1) Potri.002G072600 [exp] 280 / 2e-95 AT1G21460 345 / 4e-121 Nodulin MtN3 family protein (.1) Potri.002G072800 [exp] 280 / 2e-95 AT1G21460 345 / 4e-121 Nodulin MtN3 family protein (.1) Potri.015G074300 [exp] 174 / 4e-54 AT5G62850 290 / 8e-100 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Potri.001G383000 [exp] 167 / 2e-51 AT3G14770 251 / 1e-84 Nodulin MtN3 family protein (.1) Potri.011G103600 [exp] 166 / 1e-50 AT3G14770 232 / 7e-77 Nodulin MtN3 family protein (.1) Potri.015G021900 [exp] 161 / 8e-49 AT5G53190 286 / 9e-98 Nodulin MtN3 family protein (.1) Potri.003G143100 [exp] 155 / 3e-46 AT4G10850 262 / 4e-88 Nodulin MtN3 family protein (.1) Potri.012G031400 [exp] 154 / 5e-46 AT5G53190 310 / 3e-107 Nodulin MtN3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF03083 [flax] [poplar] MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence Show only first row Show all	>Lus10028634 pacid=23164601 polypeptide=Lus10028634 locus=Lus10028634.g ID=Lus10028634.BGIv1.0 annot-version=v1.0 ATGGCGGTTCCGTTGAATGGTACTTGTTTTGAAACTTTTGCAGGGAATGCCTTCGCCGCTTTCCTCTTCCTCGCACCAACGATTACTTTCAAGCGGATAA TCAAGAACAAGTCGACTGAGGAATTCTCCGGCGTGCCGTACCCGATGACCTTACTCAACTGCCTCCTCTCGGCGTGGTACGGCCTCCCGTTCGTTTCCAA GGACAACCTACTGGTGACCACCATCAATGGCGCCGGAGCGGCGATCGAGATTATATACGTGCTAATATTCCTGGCGTTCGCTCCCAAGAAGGAGAAGGCC AAGATCGGCGGGATATTCGCCGCCGTGCTCTCAGTGTTCGCTGCCGTGGCCCTCATCTCTTACTTGGCCCTCCACGGCAACACCCGCAAGCTCTTCTGCG GCACCGCTGCCACCGTCTTCTCCATCATCATGTATGCTTCACCTCTTTCCATCATGAGGTTGGTGATCAAGACAAAGAGCGTGGAGTTCATGCCGTTCTT CCTCTCACTCTTCGTCTTCCTATGTGGCACTTCCTGGTTCGTCTACGGCCTCCTCGGCCGTGACCCTTTCGTTGCCATACCGAATGGGTTCGGATGTGCG TTGGGGATGATGCAGCTGATCTTATACTTCATCTACCGCAACCACGACAAGAAGAAAGCGGAGAAGCAGGGATCGTCGTCGGCCATGGAGATGGGTTCCC AGAAGCCGAAACGAGACGCTGGAGCTAACGGTACCAACAACAACAACCATGCCACGGTGTGA
AA sequence Show only first row Show all	>Lus10028634 pacid=23164601 polypeptide=Lus10028634 locus=Lus10028634.g ID=Lus10028634.BGIv1.0 annot-version=v1.0 MAVPLNGTCFETFAGNAFAAFLFLAPTITFKRIIKNKSTEEFSGVPYPMTLLNCLLSAWYGLPFVSKDNLLVTTINGAGAAIEIIYVLIFLAFAPKKEKA KIGGIFAAVLSVFAAVALISYLALHGNTRKLFCGTAATVFSIIMYASPLSIMRLVIKTKSVEFMPFFLSLFVFLCGTSWFVYGLLGRDPFVAIPNGFGCA LGMMQLILYFIYRNHDKKKAEKQGSSSAMEMGSQKPKRDAGANGTNNNNHATV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21460		SWEET1, AtSWEET...	Nodulin MtN3 family protein (....		Lus10028634 [exp]	0	1
AT5G27780			SAUR-like auxin-responsive pro...		Lus10023969 [exp]	1.7	0.9568
AT4G34770			SAUR-like auxin-responsive pro...		Lus10016917 [exp]	3.2	0.9254
AT1G26945	bHLH	KDR, PRE6	KIDARI, basic helix-loop-helix...		Lus10037198 [exp]	3.5	0.9329
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009620 [exp]	7.5	0.8820
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10035976 [exp]	7.5	0.9070
AT3G45780		RPT1, NPH1, JK2...	ROOT PHOTOTROPISM 1, NONPHOTOT...		Lus10036144 [exp]	9.2	0.9159
AT4G38840			SAUR-like auxin-responsive pro...		Lus10008991 [exp]	9.5	0.9271
AT3G21580		ABCI12	ATP-binding cassette I12, coba...		Lus10001117 [exp]	13.1	0.8362
AT1G69710			Regulator of chromosome conden...		Lus10036737 [exp]	16.2	0.7974
AT1G09570		FHY2, HY8, FRE1...	ELONGATED HYPOCOTYL 8, FAR RED...		Lus10012151 [exp]	17.9	0.8669

Compare expression of checked genes

Lus10028634 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.