Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43850 482 / 3e-160 SEU SEUSS transcriptional co-regulator (.1.2) AT5G62090 330 / 2e-102 SLK2 SEUSS-like 2 (.1.2) AT4G25515 306 / 8e-95 SLK3 SEUSS-like 3 (.1) AT4G25520 306 / 8e-94 SLK1 SEUSS-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042785 [exp] 584 / 0 AT1G43850 721 / 0.0 SEUSS transcriptional co-regulator (.1.2) Lus10029756 [exp] 583 / 0 AT1G43850 721 / 0.0 SEUSS transcriptional co-regulator (.1.2) Lus10018933 [exp] 547 / 0 AT1G43850 435 / 1e-143 SEUSS transcriptional co-regulator (.1.2) Lus10038880 [exp] 335 / 9e-104 AT5G62090 557 / 0.0 SEUSS-like 2 (.1.2) Lus10006324 [exp] 228 / 7e-67 AT5G62090 277 / 9e-84 SEUSS-like 2 (.1.2) Lus10015002 [exp] 228 / 7e-65 AT5G62090 439 / 3e-143 SEUSS-like 2 (.1.2) Lus10029594 [exp] 124 / 1e-29 AT1G43850 140 / 9e-35 SEUSS transcriptional co-regulator (.1.2) Lus10029753 [exp] 72 / 1e-15 AT1G43850 42 / 9e-06 SEUSS transcriptional co-regulator (.1.2) Lus10000198 [exp] 0 / 1 AT5G62090 174 / 8e-48 SEUSS-like 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G072900 [exp] 564 / 0 AT1G43850 569 / 0.0 SEUSS transcriptional co-regulator (.1.2) Potri.005G186900 [exp] 560 / 0 AT1G43850 612 / 0.0 SEUSS transcriptional co-regulator (.1.2) Potri.007G109400 [exp] 462 / 8e-153 AT1G43850 546 / 0.0 SEUSS transcriptional co-regulator (.1.2) Potri.012G136100 [exp] 346 / 5e-108 AT5G62090 536 / 1e-178 SEUSS-like 2 (.1.2) Potri.015G138500 [exp] 345 / 1e-107 AT5G62090 551 / 0.0 SEUSS-like 2 (.1.2) Potri.003G121800 [exp] 306 / 4e-94 AT5G62090 357 / 1e-111 SEUSS-like 2 (.1.2) Potri.013G089900 [exp] 150 / 3e-42 AT1G43850 172 / 6e-50 SEUSS transcriptional co-regulator (.1.2) Potri.005G058501 [exp] 133 / 3e-33 AT1G43850 158 / 2e-41 SEUSS transcriptional co-regulator (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028635 pacid=23164600 polypeptide=Lus10028635 locus=Lus10028635.g ID=Lus10028635.BGIv1.0 annot-version=v1.0 ATGCTGGGAGCTCAGTTCGATAATATGAACATGCTTGGAGGTGTGGCCAATATGTCATCCCTACAGAATCAGTCTTTTGGAAATGGCAGCTTGAGTCCGG GGAGTAGTCAGCGCGGAGTTATTATTGATGGTGGAGCCGAGCCGGCATCATGTGTGCAGTCTAATGTGGTCAATGCCGGTCCATCGTCGAGTAAAGCTCA CGGTCAACAACTTGATGGTCAAGCATTCAAACATGATCAGCAATCAATGCAGCAGCAAAATCAGTTTGAGCAAGTGAAGTTGGAACCGCAACAGTTTGTT CATATGTCGAGACCGTCTTCTCAATCCGCAGCTGCTCAATTTAGACATCAGAAACGACTGTTGCAAATACAACAACATCAGCATCAGCAACAACAACAAC TCCCGAAAGCAATGCCGCAGCAACGTTCTCAGTTACCACAACGGTCTCCGGCTAAACCTGTGTATGAGCCTGGAATGTGTGCCAGGCGTCTTACGCGTTA TATGTATCAACAGCAACATAGACCAGAAGACAACAATATCGAGTTCTGGAGAAAATTTGTTGCCGAGTACTTTGCTCCCTATGCAAGGAAGAAGTGGTGT GTCTCCATGTATGGAAGTGGTCGACAAGCAAATGGAGTTTCCCCCCAGGATGTATGGCATTGTGAAATTTGCAACTGCAAACCAGGCCGTGGGTTTGAGG CCACCGTTGAGGTTCTTCCCCGGCTCTACAAAATAAAATACGAAAGCGGCACTTTGGAAGAGCTTCTTTATGTTGATATGCCGCACGAATATCCAAATTC ATCAGGTCAAATTGTGTTGGATTATGCAAAAGCGATCCAAGAAAGTGTCTTTGACCAACTCCGTGTTGTCCGTGATGGTCAACTACGAATAGTCTTCTCA CCTGAATTAAAGATATGTTCTTGGGAATTTTGTACTCGGCGCCATGAAGAGCTCATCCCTAGAAGATTGCTTATACCACAGGTCAGCCAGCTCGGCGCAG CAGCTCAGAAATATCAGGCTGCTACTCAGAATACTTCATCATCCAATTTGTCTGCTCAGGAGTTGCTAAATAATTGCACTGTGTTTGTTGCATCGGCCCG CCAGCTTGCGAAAGCCTTGGAAGTGCCGCTGGTAAATGATTTGGGATATACGAAGAGTTACGTGCGGTGCCTTCAGATATCGGAGGTGTTTAACAGCATG AAAGATTTGATCGATTACAGTCGAGAAACACAGACCGGTCCTATGGAGAGTCTGACAAAGTTCCCTCGACGAGCGGTTACTTCAACGGGATTTAACGGTC AGGGTCAACAGTCGGAGGAGCAACAGCCACAGCAGCAACCTCGGGCTTTACCACAAAGTTCAAACGGCAAGCCAAGCTCAGTCCACGCAGGGGCAATGCA AGTCGCTGCAGACAGTGGTGCCCCTACTGTGAATAATAACGTGGCCAACTCGGGAAGCACAATTGCTGGACTTCTCCACCAGAATTCAATGAACTCGAGA CACCACAGTTCGGCGAACAATGCAAGTGCACAGGCTCCTTCTCCTCCCGGTTCGTCGAGTACAGCGCCACAGCCACAACCACAACCTAATCCTTCTACTT TCCAGTCGCCTACTCCTCCGTCGTCAAGTGCTCCACAAATGGCGGCTCATAACGACGTAGACCAAGGAGAACCTCTGAGCTCCGTCCAGAAACTAATTCA CAACGTGATGAAGTCGACGAGCAACAACAATAATAATGCAAACGGTATTCTGCCAATGAGCAACAATCACGGTAATAATCACAACTCGTTGATGAATGGA CGTATGGCTATGGGGTCGATGGCACGAGAGCAAACAATGAGCCATCATCATCATCATCAACAGCAGGATTTGAGTAACCAATTGCTTAGTGGGTTAGGAG CTATGAATGGGTTTAATAATCTCCAGTTCGACTGGAAACCGTCTCCAGTTTAG
AA sequence Show only first row Show all	>Lus10028635 pacid=23164600 polypeptide=Lus10028635 locus=Lus10028635.g ID=Lus10028635.BGIv1.0 annot-version=v1.0 MLGAQFDNMNMLGGVANMSSLQNQSFGNGSLSPGSSQRGVIIDGGAEPASCVQSNVVNAGPSSSKAHGQQLDGQAFKHDQQSMQQQNQFEQVKLEPQQFV HMSRPSSQSAAAQFRHQKRLLQIQQHQHQQQQQLPKAMPQQRSQLPQRSPAKPVYEPGMCARRLTRYMYQQQHRPEDNNIEFWRKFVAEYFAPYARKKWC VSMYGSGRQANGVSPQDVWHCEICNCKPGRGFEATVEVLPRLYKIKYESGTLEELLYVDMPHEYPNSSGQIVLDYAKAIQESVFDQLRVVRDGQLRIVFS PELKICSWEFCTRRHEELIPRRLLIPQVSQLGAAAQKYQAATQNTSSSNLSAQELLNNCTVFVASARQLAKALEVPLVNDLGYTKSYVRCLQISEVFNSM KDLIDYSRETQTGPMESLTKFPRRAVTSTGFNGQGQQSEEQQPQQQPRALPQSSNGKPSSVHAGAMQVAADSGAPTVNNNVANSGSTIAGLLHQNSMNSR HHSSANNASAQAPSPPGSSSTAPQPQPQPNPSTFQSPTPPSSSAPQMAAHNDVDQGEPLSSVQKLIHNVMKSTSNNNNNANGILPMSNNHGNNHNSLMNG RMAMGSMAREQTMSHHHHHQQQDLSNQLLSGLGAMNGFNNLQFDWKPSPV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10028635 [exp]	0	1
AT3G10540			3-phosphoinositide-dependent p...		Lus10038647 [exp]	1.4	0.8716
AT4G38870			F-box and associated interacti...		Lus10034309 [exp]	2.8	0.8783
AT4G28600		NPGR2	no pollen germination related ...		Lus10007743 [exp]	4.2	0.8361
AT2G42990			GDSL-like Lipase/Acylhydrolase...		Lus10029958 [exp]	4.9	0.8593
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Lus10022620 [exp]	7.9	0.8221
AT3G12210			DNA binding (.1.2)		Lus10018653 [exp]	9.2	0.8673
AT1G22260		AtZYP1a, ZYP1a	Myosin heavy chain-related pro...		Lus10036517 [exp]	14.1	0.8690
AT1G80420		ATXRCC1	BRCT domain-containing DNA rep...		Lus10035899 [exp]	20.6	0.7843
AT1G50660			unknown protein		Lus10032637 [exp]	28.4	0.8098
AT1G27460		NPGR1	no pollen germination related ...		Lus10018678 [exp]	28.6	0.7886

Compare expression of checked genes

Lus10028635 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.