Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26770 656 / 0 Phosphatidate cytidylyltransferase family protein (.1) AT4G22340 650 / 0 CDS2 cytidinediphosphate diacylglycerol synthase 2 (.1.2.3) AT1G62430 649 / 0 ATCDS1 CDP-diacylglycerol synthase 1 (.1) AT3G60620 59 / 3e-09 CDS5 cytidinediphosphate diacylglycerol synthase 5 (.1) AT2G45150 57 / 1e-08 CDS4 cytidinediphosphate diacylglycerol synthase 4 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018934 [exp] 874 / 0 AT4G26770 656 / 0.0 Phosphatidate cytidylyltransferase family protein (.1) Lus10009281 [exp] 62 / 2e-10 AT2G45150 520 / 0.0 cytidinediphosphate diacylglycerol synthase 4 (.1.2.3) Lus10015882 [exp] 49 / 6e-06 AT2G45150 470 / 1e-163 cytidinediphosphate diacylglycerol synthase 4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G001200 [exp] 668 / 0 AT4G22340 705 / 0.0 cytidinediphosphate diacylglycerol synthase 2 (.1.2.3) Potri.014G060100 [exp] 60 / 2e-09 AT2G45150 453 / 2e-158 cytidinediphosphate diacylglycerol synthase 4 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0234 [flax] [poplar] CTPT PF01148 [flax] [poplar] CTP_transf_1 Cytidylyltransferase family
Representative CDS sequence Show only first row Show all	>Lus10028636 pacid=23164511 polypeptide=Lus10028636 locus=Lus10028636.g ID=Lus10028636.BGIv1.0 annot-version=v1.0 ATGCAGAAGGATGTTAGCTCACCGGTCTCAACTCCCAGGTTGAGGCATCGGAGAAGATCCAATGAGATTCCTCAAGAGATAAATAAAGAAAATGGAACCA ATTTGCTCATCAATGACCAAAACAAGTACAAATCAATGTGGATTCGCACTTTGTCCTCCTTGTGGATGCTGGGGAGCTTTGTGTTTGTTCTTTGTATGGG GCATCTATACATTTGGGCCATGGTGGTGGTTATCCAAATATTTATGGCCAGTGAGCTTTTCACCTTACTCAGAAGAGCTCATGAAAACAAGCGCCTTCCT GGTTTCAGGCTACTTAACTGGCACTTCTTCTTCACTGCAATGCTTTTTGTGTATGGTCGAATCATCAGTCAGCGGCTTGTTAACACGGTGACATCAGAAA ATATCCTCTACAAGCTTGTAGGTGGTTTTGTCAAGTACCACATGGCCATATGTTATTTTCTGTATATCGCAGGATTTGTGTGGTTTATCTTGACGTTAAA GAAGAAAATGTACAAGTATCAATTTGGCCAATATGCTTGGACACACATGATTTTGATTGTCGTATTCGCTCAATCTGCTTTCACTGTGGCCAATATTTTT GAAGGCATCTTTTGGTTCTTGCTCCCGGCATCACTTATTGCAGTCAATGACGTTGCTGCTTACTTCTTTGGCTTCTTTTTTGGGAAAACTCCTTTGATCA AGTTGTCTCCAAAGAAAACATGGGAGGGTTTCATTGGAGCATCTGTTGCAACTATGATCTCAGCATTTGTGCTTGCAAACATCATGGGCCAGTTCCAGTG GCTGACATGTCCTAGGAAGGATTTGTCGACCGGGTGGCTTGAATGTGATCCTGGCCCTCTATATAAGCCTGAGCGCTACACGTTGGAATGGCTTCCTCAT TGGGTTCCTTGGAAAGAGATATCAATCTTGCCAGTCCAGTGGCACGCATTGTGGTTAGGGTTATTTGCATCAATTATAGCTCCTTTTGGAGGATTCTTCG CTAGTGGATTCAAGAGAGCCTTCAATGTCAAGGATTTTGGGGATAGCATACCTGGACACGGTGGATTCACTGACCGAATGGACTGCCAGATGGTGATTGC AGTATTTGCTTATATTTATCACCAGTCGTTTGTTGCTCCGAACGATTATTCAGTGGATATGATTTTTGACCAGGTAATGGCTGGGCTTACGTTGGAGGAG CAGCAAACTTTGTATATGAAGCTAGGCAAGATGCTTCACGAAAGACTTGGAGGACTATCATCATCTTGA
AA sequence Show only first row Show all	>Lus10028636 pacid=23164511 polypeptide=Lus10028636 locus=Lus10028636.g ID=Lus10028636.BGIv1.0 annot-version=v1.0 MQKDVSSPVSTPRLRHRRRSNEIPQEINKENGTNLLINDQNKYKSMWIRTLSSLWMLGSFVFVLCMGHLYIWAMVVVIQIFMASELFTLLRRAHENKRLP GFRLLNWHFFFTAMLFVYGRIISQRLVNTVTSENILYKLVGGFVKYHMAICYFLYIAGFVWFILTLKKKMYKYQFGQYAWTHMILIVVFAQSAFTVANIF EGIFWFLLPASLIAVNDVAAYFFGFFFGKTPLIKLSPKKTWEGFIGASVATMISAFVLANIMGQFQWLTCPRKDLSTGWLECDPGPLYKPERYTLEWLPH WVPWKEISILPVQWHALWLGLFASIIAPFGGFFASGFKRAFNVKDFGDSIPGHGGFTDRMDCQMVIAVFAYIYHQSFVAPNDYSVDMIFDQVMAGLTLEE QQTLYMKLGKMLHERLGGLSSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26770			Phosphatidate cytidylyltransfe...		Lus10028636 [exp]	0	1
AT4G26770			Phosphatidate cytidylyltransfe...		Lus10018934 [exp]	1.0	0.8209
AT4G39630			unknown protein		Lus10036631 [exp]	6.0	0.6603
AT2G34930			disease resistance family prot...		Lus10002753 [exp]	7.3	0.6281
					Lus10022247 [exp]	14.7	0.5992
AT1G13310			Endosomal targeting BRO1-like ...		Lus10041484 [exp]	15.3	0.6982
AT1G05785			Got1/Sft2-like vescicle transp...		Lus10019570 [exp]	20.9	0.6622
AT1G11755		LEW1	LEAF WILTING 1, Undecaprenyl p...		Lus10042338 [exp]	39.6	0.6541
AT3G11620		BAS1	alpha/beta-Hydrolases superfam...		Lus10016976 [exp]	45.1	0.6374
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10040029 [exp]	45.6	0.5888
AT5G14610			DEAD box RNA helicase family p...		Lus10035149 [exp]	53.4	0.6144

Compare expression of checked genes

Lus10028636 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.