Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25800 619 / 0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G50100 124 / 9e-31 SDN1 small RNA degrading nuclease 1 (.1) AT5G05540 123 / 1e-30 SDN2 small RNA degrading nuclease 2 (.1.2) AT5G67240 118 / 1e-27 SDN3 small RNA degrading nuclease 3 (.1.2) AT3G50090 86 / 3e-18 Exonuclease family protein (.1) AT3G15080 81 / 9e-17 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT2G48100 45 / 8e-05 C2H2ZnF Exonuclease family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018935 [exp] 1065 / 0 AT5G25800 635 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10042779 [exp] 782 / 0 AT5G25800 712 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10029748 [exp] 756 / 0 AT5G25800 707 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10011505 [exp] 115 / 1e-27 AT5G67240 358 / 1e-116 small RNA degrading nuclease 3 (.1.2) Lus10019321 [exp] 117 / 2e-27 AT5G67240 378 / 1e-122 small RNA degrading nuclease 3 (.1.2) Lus10011504 [exp] 115 / 6e-27 AT5G67240 370 / 5e-119 small RNA degrading nuclease 3 (.1.2) Lus10000997 [exp] 76 / 1e-14 AT3G15080 325 / 4e-112 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10011026 [exp] 72 / 9e-14 AT3G15080 283 / 2e-96 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10019320 [exp] 73 / 1e-13 AT5G67240 214 / 2e-66 small RNA degrading nuclease 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G186600 [exp] 729 / 0 AT5G25800 752 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.002G073300 [exp] 237 / 4e-74 AT5G25800 233 / 3e-73 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.007G048000 [exp] 126 / 6e-31 AT5G67240 402 / 4e-132 small RNA degrading nuclease 3 (.1.2) Potri.001G373500 [exp] 79 / 4e-16 AT3G15080 346 / 1e-120 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.002G215700 [exp] 47 / 2e-05 AT2G48100 374 / 3e-129 Exonuclease family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF00929 [flax] [poplar] RNase_T Exonuclease
Representative CDS sequence Show only first row Show all	>Lus10028637 pacid=23164489 polypeptide=Lus10028637 locus=Lus10028637.g ID=Lus10028637.BGIv1.0 annot-version=v1.0 ATGCAGCCACCGGAGCTGGAAACTGAAGCTCCAGCTGCAGAGAAGGAGGAGTTTACCGTCGACGAAGTAAGTAACGGCGGCTCTGTCAGAAACCGATACT CCGAACCCCAAGCAAAGCCAGCAATTACGTTCAAGGAACCAGAAGCTGGTTTGAGTCTCACTTTGCAGGACATTCAAGGACTTGTGACTTGTGTTCTTGC TGAAGGAACCATGCCTCCTTGGGTGTGTATTAATAACAAGGCTTTGATCCCGAAAGTGGTGATGGTTTATGTCCCCGGCCTAGATGCAGCTTTGTACTTG TCGAAGCCTAAGTTGTTTGCTGGTTTTCGAGAACACTGCGGGAAACCAAAGGGACAGTTAGCTATTAGCTGTTTAACAGATCGCAATCAGACTATTGATG CTCTTCTAACCTGCAAGGCGAAACGGAAAAGAGATGATGACGTGGCTTCAGATCTAAATACATCAGATGCAGAGATGAGTGATTCAGCGATGGGAAGTTT GCCTTTCACTAAGCTCAAAGAGGTGCCTTTTCCTCCTAAGTATTATACACTGACTGCTCAAGAATTAGAAGACAATGGATATTGTACTCCTAACACACCA GGTTTTCTCTCTACCCTTCCTGCTCCTGTAGGCTCTCCTGTACATGATTTCCTTGCACTTGACTGTGAAATGTGTATCACGAAAGATGGTTTCGAGCTAA CAAGAATAACTGTGGTGGATGTTGCTGGAAAGGTATTGTTGGATAAATTGGTCAAACCGGAAAATCACATCGTTGATTACAACACAAGATTTAGTGGAAT CACATTTGAAATGATGAGCAAGGTTACCACAAGTCTCAAAGACGTCCAGGAAGATTTCTTAAAACTTGTTCACCAAGAAACCATCCTCGTCGGCCATTCC CTAGAGAATGACTTGTTAGCCTTAAAGATCTCTCACAAATCGGTGATTGATACTGCCGTGTTATACAAACATCCACGAGGAGGCTCGTATAAATCCGCAC TGCGAGTTCTCGCCAAGAGATATCTCCGGAGGGAGATACAACAGTCCGGTGCCGGACATGATAGCGCCGAAGATGCAAGAGCTGCGATGGAACTCGCATT GCTAAAAATAAAACGCGGACCTGATTTCGGTTCTCCTCGATCCTTTTCTCGAAAAAAGCTCCTCTCAGTACTGAGAGAGAGTAGCAAAGCATCATCTATA ATCGACGATATATCCATAGTAAAGCAGTATTCTTCCGAGTCATCGCATGCATTTCCCGTGACTTCAGACGAAGAAGCCCTTCTAAAAGCACAAAAAGAGG TGATGAAAGACCAAACGCAGTTCATCTGGACGCAATTTTCGGAGCTGGACTCCTATCTCGAAAAGCAAGCGAATGATGAAGAGAAAGTAAATGGAAAACT TGCTGAGATGATGTCACTGCTTACATGCGAAAAGAAGTCTACCACCAACAAGAAAAGCGTTACTTGCCAGATGCCAGCTCATCTCAAGGGCGTTGTGACT CGCCTGAATCGAAGGGTACGCGATCTCTGTTCAGCTTTACCAACTAATACCATGATCATAATCTTCACCGGCCATGGTGATACTGCAATCGTCCGGAGAG TGAGGAAGATGCTAGAAGACCAGAGCGAGACGAAGTTCGGTAGGGAGAGTATTCTAAAGGTTTTGCAAGAGCTGCAAGCTCAAGCAGAAGTTGCGTTGTG CTTCATTGGCTTGAAGAAATAG
AA sequence Show only first row Show all	>Lus10028637 pacid=23164489 polypeptide=Lus10028637 locus=Lus10028637.g ID=Lus10028637.BGIv1.0 annot-version=v1.0 MQPPELETEAPAAEKEEFTVDEVSNGGSVRNRYSEPQAKPAITFKEPEAGLSLTLQDIQGLVTCVLAEGTMPPWVCINNKALIPKVVMVYVPGLDAALYL SKPKLFAGFREHCGKPKGQLAISCLTDRNQTIDALLTCKAKRKRDDDVASDLNTSDAEMSDSAMGSLPFTKLKEVPFPPKYYTLTAQELEDNGYCTPNTP GFLSTLPAPVGSPVHDFLALDCEMCITKDGFELTRITVVDVAGKVLLDKLVKPENHIVDYNTRFSGITFEMMSKVTTSLKDVQEDFLKLVHQETILVGHS LENDLLALKISHKSVIDTAVLYKHPRGGSYKSALRVLAKRYLRREIQQSGAGHDSAEDARAAMELALLKIKRGPDFGSPRSFSRKKLLSVLRESSKASSI IDDISIVKQYSSESSHAFPVTSDEEALLKAQKEVMKDQTQFIWTQFSELDSYLEKQANDEEKVNGKLAEMMSLLTCEKKSTTNKKSVTCQMPAHLKGVVT RLNRRVRDLCSALPTNTMIIIFTGHGDTAIVRRVRKMLEDQSETKFGRESILKVLQELQAQAEVALCFIGLKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25800			Polynucleotidyl transferase, r...		Lus10028637 [exp]	0	1
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10035604 [exp]	1.0	0.9405
AT5G25800			Polynucleotidyl transferase, r...		Lus10018935 [exp]	1.4	0.9062
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10003245 [exp]	3.5	0.9015
AT3G05350			Metallopeptidase M24 family pr...		Lus10004479 [exp]	3.9	0.8736
AT1G78915			Tetratricopeptide repeat (TPR)...		Lus10034802 [exp]	4.2	0.8726
AT1G63610			unknown protein		Lus10016008 [exp]	6.0	0.8358
AT1G13270		MAP1B, MAP1C	methionine aminopeptidase 1B (...		Lus10021701 [exp]	8.7	0.8749
AT4G21190		EMB1417	embryo defective 1417, Pentatr...		Lus10027535 [exp]	11.2	0.8494
AT1G22940		THIE, TH-1, TH1	THIAMINEE, THIAMINE REQUIRING ...		Lus10015466 [exp]	11.8	0.8615
AT4G27340			Met-10+ like family protein (....		Lus10037871 [exp]	12.2	0.8066

Compare expression of checked genes

Lus10028637 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.