Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13560 960 / 0 NAD-ME1 NAD-dependent malic enzyme 1 (.1) AT4G00570 706 / 0 NAD-ME2 NAD-dependent malic enzyme 2 (.1) AT5G25880 382 / 3e-125 ATNADP-ME3 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) AT2G19900 371 / 3e-121 ATNADP-ME1 Arabidopsis thaliana NADP-malic enzyme 1, NADP-malic enzyme 1 (.1) AT5G11670 367 / 3e-119 ATNADP-ME2 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1) AT1G79750 360 / 4e-116 ATNADP-ME4 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018939 [exp] 1127 / 0 AT2G13560 1081 / 0.0 NAD-dependent malic enzyme 1 (.1) Lus10009822 [exp] 748 / 0 AT4G00570 1028 / 0.0 NAD-dependent malic enzyme 2 (.1) Lus10011772 [exp] 744 / 0 AT2G13560 827 / 0.0 NAD-dependent malic enzyme 1 (.1) Lus10040930 [exp] 734 / 0 AT4G00570 1011 / 0.0 NAD-dependent malic enzyme 2 (.1) Lus10025823 [exp] 380 / 2e-123 AT1G79750 1019 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10043025 [exp] 375 / 6e-122 AT5G25880 926 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10012964 [exp] 366 / 1e-119 AT2G19900 932 / 0.0 Arabidopsis thaliana NADP-malic enzyme 1, NADP-malic enzyme 1 (.1) Lus10011125 [exp] 337 / 5e-108 AT5G25880 917 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10005484 [exp] 332 / 2e-106 AT5G25880 886 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G135300 [exp] 1024 / 0 AT2G13560 1007 / 0.0 NAD-dependent malic enzyme 1 (.1) Potri.014G043700 [exp] 1024 / 0 AT2G13560 982 / 0.0 NAD-dependent malic enzyme 1 (.1) Potri.002G156000 [exp] 732 / 0 AT4G00570 903 / 0.0 NAD-dependent malic enzyme 2 (.1) Potri.014G079900 [exp] 730 / 0 AT4G00570 904 / 0.0 NAD-dependent malic enzyme 2 (.1) Potri.018G086700 [exp] 377 / 3e-123 AT1G79750 957 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.018G046600 [exp] 374 / 2e-122 AT5G25880 926 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Potri.006G236500 [exp] 372 / 5e-121 AT5G25880 945 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Potri.003G049300 [exp] 363 / 3e-117 AT1G79750 932 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.001G189700 [exp] 357 / 9e-115 AT1G79750 950 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0603 [flax] [poplar] AA_dh_N PF00390 [flax] [poplar] malic Malic enzyme, N-terminal domain CL0063 [flax] [poplar] NADP_Rossmann PF03949 [flax] [poplar] Malic_M Malic enzyme, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10028642 pacid=23164533 polypeptide=Lus10028642 locus=Lus10028642.g ID=Lus10028642.BGIv1.0 annot-version=v1.0 ATGTCGAATTTCAACTCCCAGCTCAGAGCTTCATCTGCAATCCTCAAGCGCCTCCGCCATGGATTTCCTCCTCCTGCTTCGGCCGCCGCAGCTAGATCCT TCACCACCACCACCGAAGGAAATCGTCCCACCATTGTGCACAAGCGGAGTCTTGACATTCTTCACGATCCTTGGTTTAACAAGGGAACTGCCTTCTCAAT GACAGAACGAGACCGGCTCGACCTTCGCGGGCTTCTTCCACCCAACGTTATGTCTTCTCAGCAGCAGATTCAGCGATTCATGGCTGATTTGAAGCGGCTT GAAGTTCATGCGCGGGATGGACCATCTGATCCAAACGCTCTGGCTAAATGGAGGATTCTCAATCGCTTGCACGACAGAAATGAAACCATGTACTACAAGG TTCTGATTGATAAGATTGAGGAATATGCGCCCATTGTGTACACTCCAACCGTCGGGCTTGTTTGCCAGAATTACAGTGGGCTGTTTAGAAGGCCGAGGGG AATGTATTTCAGTGCTGAAGACCGGGGGGAGATGATGTCCATGGTGTACAATTGGCCAGCAGAGCAGGTTGATATGATTGTTGTTACAGATGGAAGTAGG ATATTGGGCCTTGGAGATCTTGGTGTTCACGGTATTGGCATTGCCGTTGGGAAGCTCGATTTATATGTTGCTGCTGCTGGCATAAATCCCCAGAGGGTGC TCCCTGTGATGATTGATGTCGGGACTAACAATGAGAAGTTGTTGAAAGACCCTTTGTATCTGGGGCTGCAAGAAAATCGTCTTGATGGCGATGAGTATGT TGATGTAATTGATGAGTTCATGCAGGCAGTTTATACTCGTTGGCCCAATGTGATTGTGCAGTTCGAGGATTTTCAAAGCAAGTGGGCTCTGAAGTTATTG CAGAGATACAGGAATTCATATAGAATGTTCAATGATGATGTCCAGGGAACAGCAGGGGTTGCAATTGCTGGTCTTCTAGGAGCAGTAAGAGCACAAGGAA GACCGATGATCGACTTTCCAAAGCAAAAGATTGTGGTTGCTGGTGCTGGAAGTGCAGGGATTGGTGTCCTGAATACTGCCAGGAAAACAATGGCTAGAAT GTTGGGAAACAACGAATCTGCTTTTGAGAGTGCACGTAGTCAGTTCTGGGTTGTTGATGCTAAGGGTCTAATCACTGAGGATAGAGAAAATATTGATCCA GATGCCCAGCCATTTGCGAGGAAAGTTAATGAAGCCAATCGTCAAGGATTAGGGGAAGGTGCAAGTCTAGTGGAAGTGGTGAGGCAAGTGAAGCCGGATG TGCTTCTTGGATTGTCAGCAGTTGGGGGACTGTTTTCGAAGGAGGTGTTAGAGGCCCTAAAGGGTTCAACTTCGACAAGGCCAGCCATCTTTGCTATGTC AAACCCAACAAATAATGCTGAATGCACTCCTGATGAAGCATTTTCAACTGTGGGCGACAATATTATATTTGCAAGTGGAAGTCCATTTAGAGACGTGGAT CTTGGAAACGGTCGTATTGGGCATTCCAACCAAGGAAACAACATGTACCTCTTTCCAGGCATTGGACTGGGGACTCTACTTTCTGGCTCCAGGATCATAT CAGATGGTATGCTACAGGCTGCAGCTGAATGCCTAGCAGGATATATCACTGAAGAGGAGGTTCTAGATGGGGTCATTTTCCCTTCTATCTCGAGAATAAG AGATATAACAAAGGAGGTTGCTGCAGCTGTGGTGAAGGAAGCTATAATAGAGGATTTGGCGGAAGGATATCGTGGGATGGACTCTCGGGACCTCCAAAAA CTTAATCAGGAGGAAATCGCGGAGTACGTGAAGAACAACATGTGGAATCCTGAGTACCCAACATTGGTATTTAAAGAGGACTGA
AA sequence Show only first row Show all	>Lus10028642 pacid=23164533 polypeptide=Lus10028642 locus=Lus10028642.g ID=Lus10028642.BGIv1.0 annot-version=v1.0 MSNFNSQLRASSAILKRLRHGFPPPASAAAARSFTTTTEGNRPTIVHKRSLDILHDPWFNKGTAFSMTERDRLDLRGLLPPNVMSSQQQIQRFMADLKRL EVHARDGPSDPNALAKWRILNRLHDRNETMYYKVLIDKIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMMSMVYNWPAEQVDMIVVTDGSR ILGLGDLGVHGIGIAVGKLDLYVAAAGINPQRVLPVMIDVGTNNEKLLKDPLYLGLQENRLDGDEYVDVIDEFMQAVYTRWPNVIVQFEDFQSKWALKLL QRYRNSYRMFNDDVQGTAGVAIAGLLGAVRAQGRPMIDFPKQKIVVAGAGSAGIGVLNTARKTMARMLGNNESAFESARSQFWVVDAKGLITEDRENIDP DAQPFARKVNEANRQGLGEGASLVEVVRQVKPDVLLGLSAVGGLFSKEVLEALKGSTSTRPAIFAMSNPTNNAECTPDEAFSTVGDNIIFASGSPFRDVD LGNGRIGHSNQGNNMYLFPGIGLGTLLSGSRIISDGMLQAAAECLAGYITEEEVLDGVIFPSISRIRDITKEVAAAVVKEAIIEDLAEGYRGMDSRDLQK LNQEEIAEYVKNNMWNPEYPTLVFKED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13560		NAD-ME1	NAD-dependent malic enzyme 1 (...		Lus10028642 [exp]	0	1
AT2G13560		NAD-ME1	NAD-dependent malic enzyme 1 (...		Lus10018939 [exp]	5.1	0.7770
AT2G23420		NAPRT2	nicotinate phosphoribosyltrans...		Lus10019337 [exp]	9.5	0.7306
AT1G49670		NQR	ARP protein (REF) (.1), ARP pr...		Lus10002406 [exp]	10.8	0.6762
AT1G49710		ATFUT12, FUCTB,...	fucosyltransferase 12 (.1)		Lus10019855 [exp]	11.7	0.7964
AT5G19740			Peptidase M28 family protein (...		Lus10011133 [exp]	13.6	0.7541
AT2G39130			Transmembrane amino acid trans...		Lus10037974 [exp]	22.4	0.6772
AT1G79610		ATNHX6	Na+/H+ antiporter 6, ARABIDOPS...		Lus10038727 [exp]	23.2	0.7532
AT2G30350			Excinuclease ABC, C subunit, N...		Lus10042228 [exp]	26.2	0.6571
AT2G02860		ATSUT2, ATSUC3,...	ARABIDOPSIS THALIANA SUCROSE T...		Lus10012844 [exp]	28.0	0.7153
AT1G15780			unknown protein		Lus10025450 [exp]	35.5	0.6814

Compare expression of checked genes

Lus10028642 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.