Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31130 143 / 4e-40 unknown protein AT4G19950 135 / 7e-37 unknown protein AT5G44860 128 / 3e-34 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018940 [exp] 475 / 3e-169 AT1G31130 231 / 8e-74 unknown protein Lus10018322 [exp] 135 / 6e-37 AT4G19950 417 / 3e-147 unknown protein Lus10017130 [exp] 105 / 1e-25 AT4G19950 410 / 1e-144 unknown protein Lus10038358 [exp] 85 / 4e-20 AT4G19950 183 / 1e-58 unknown protein Lus10036220 [exp] 48 / 3e-06 AT5G44860 265 / 3e-89 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G186200 [exp] 277 / 9e-92 AT4G19950 185 / 3e-56 unknown protein Potri.007G105600 [exp] 249 / 1e-80 AT4G19950 179 / 7e-54 unknown protein Potri.007G105700 [exp] 233 / 3e-74 AT4G19950 182 / 4e-55 unknown protein Potri.005G184600 [exp] 168 / 2e-49 AT4G19950 133 / 3e-36 unknown protein Potri.015G125600 [exp] 140 / 6e-39 AT1G31130 327 / 7e-112 unknown protein Potri.012G125800 [exp] 130 / 5e-35 AT5G44860 396 / 4e-139 unknown protein Potri.002G074200 [exp] 130 / 7e-35 AT1G31130 128 / 3e-34 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028643 pacid=23164514 polypeptide=Lus10028643 locus=Lus10028643.g ID=Lus10028643.BGIv1.0 annot-version=v1.0 ATGGACAGAGAACAAGAGGAGATGCAGTTCCTAGGCATATTTGGAGTGTACAAGGAATCATACAAGATCATCATCCAATGGCGCAGAATCTTCAGCCAGA TCACCCTCTCCTTGATCCTCCCTCTGGCCTTCATCTTCCTCGCCCACAAGGAGGTATCGACTCTCCTCCTCTCGAAAATCCTCCGCTCCGAAATCCAGCT CGACGAGACCCCTGTTTCGTCCGCTGGTCGTCGCTCCAGGATCTCCGGAGTGTTGACCTCCGAGTGGACCTACTTCTGGCTCCTCAAGGCCGCTTACTTC ACGTTCTTGCTGCTCTTCTCGTTGCTGTCGACGTCGGCGGTTGTTTTCTCCGTCGCCTCGCTCTACACCGGCCGCCGTGACTTGTCTTTCCGCAAGGTGA TCATAGTCGTGGTACCCAAAGTATGGAAGCGATTAATCGTGACCTTCCTATGCTATTTCCTCTTCATCTTCGCCTACAACTTCATTGCATTCATCATCTT TGTCATAGTCGCTGTCACCCTCATCAACACAACGTGGGAGGGGAATGTCGCCTTCCCCGTCCTCCTCGTCCTCTATTTCGTCGGATTCCTTTACTTCACC ATAACATGGCAACTTGCCAGCGTGGTGTCGGTCTTGGAGGACTCGTATGGGTTTCGAGCCATGTCAAAGAGTAGGGCCTTGCTCAAAGGGAAGACGTGGC TCGCCACATTCATCTTCTTCAAGCTCAGTTTTATTTTTGGAGCCATTCAGGTTCTGTTCGATAAGTTGGTGATCCACGGGTGGAGCAACAGAGTGGGGCC AGCCGGTCGGGTTGCAGCCGGGATAGGCTCATTGCTCTTGCTACTAAAGGTGTTCCTCTTCGGGCTAGTGGTTCAGACGGTGTTGTACTTTGTATGCAAG AGCTACCACCACGAGAACATCGACAAATCGGCCTTGTCGGAGCATTTGGAAGGATATTTAGGGGATTATGTGCCGTTGAAATCGAAGGATGTGCAGATGG AGCATTATCTCGACGAGGACGAAGTTTGA
AA sequence Show only first row Show all	>Lus10028643 pacid=23164514 polypeptide=Lus10028643 locus=Lus10028643.g ID=Lus10028643.BGIv1.0 annot-version=v1.0 MDREQEEMQFLGIFGVYKESYKIIIQWRRIFSQITLSLILPLAFIFLAHKEVSTLLLSKILRSEIQLDETPVSSAGRRSRISGVLTSEWTYFWLLKAAYF TFLLLFSLLSTSAVVFSVASLYTGRRDLSFRKVIIVVVPKVWKRLIVTFLCYFLFIFAYNFIAFIIFVIVAVTLINTTWEGNVAFPVLLVLYFVGFLYFT ITWQLASVVSVLEDSYGFRAMSKSRALLKGKTWLATFIFFKLSFIFGAIQVLFDKLVIHGWSNRVGPAGRVAAGIGSLLLLLKVFLFGLVVQTVLYFVCK SYHHENIDKSALSEHLEGYLGDYVPLKSKDVQMEHYLDEDEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31130			unknown protein		Lus10028643 [exp]	0	1
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10012797 [exp]	2.0	0.9545
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Lus10025754 [exp]	3.2	0.9580
AT1G52330			Late embryogenesis abundant (L...		Lus10037534 [exp]	3.5	0.9215
AT1G35830			VQ motif-containing protein (....		Lus10024738 [exp]	4.7	0.9229
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10031900 [exp]	6.2	0.9214
AT3G24460			Serinc-domain containing serin...		Lus10033091 [exp]	7.2	0.8877
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10041267 [exp]	7.4	0.9446
AT2G39518			Uncharacterised protein family...		Lus10040298 [exp]	7.7	0.9528
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10004748 [exp]	9.2	0.8757
AT3G59480			pfkB-like carbohydrate kinase ...		Lus10013611 [exp]	10.2	0.9514

Compare expression of checked genes

Lus10028643 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.