Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77030 998 / 0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) AT5G60990 216 / 5e-62 DEA(D/H)-box RNA helicase family protein (.1) AT4G16630 211 / 1e-57 DEA(D/H)-box RNA helicase family protein (.1) AT5G51280 198 / 3e-54 DEAD-box protein abstrakt, putative (.1) AT2G33730 200 / 4e-54 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G16280 195 / 5e-54 SWA3, AtRH36 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) AT5G63120 196 / 9e-54 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G65900 195 / 5e-53 DEA(D/H)-box RNA helicase family protein (.1) AT3G01540 194 / 1e-52 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT3G18600 192 / 2e-52 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018941 [exp] 1475 / 0 AT1G77030 1043 / 0.0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) Lus10000777 [exp] 303 / 3e-98 AT1G77030 230 / 1e-71 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) Lus10031761 [exp] 220 / 2e-63 AT5G60990 679 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10031182 [exp] 218 / 1e-62 AT5G60990 674 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10042754 [exp] 209 / 8e-57 AT1G16280 983 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10023252 [exp] 203 / 4e-56 AT5G51280 1015 / 0.0 DEAD-box protein abstrakt, putative (.1) Lus10015187 [exp] 198 / 2e-53 AT2G33730 1083 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10029596 [exp] 196 / 2e-53 AT1G16280 674 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10006326 [exp] 195 / 3e-53 AT1G16280 673 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G185900 [exp] 1087 / 0 AT1G77030 1106 / 0.0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) Potri.007G068800 [exp] 213 / 1e-60 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.006G249100 [exp] 211 / 4e-60 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.005G241300 [exp] 209 / 5e-57 AT4G16630 829 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.004G224000 [exp] 199 / 8e-55 AT5G51280 1072 / 0.0 DEAD-box protein abstrakt, putative (.1) Potri.008G084700 [exp] 197 / 9e-55 AT1G16280 616 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Potri.010G152400 [exp] 205 / 1e-54 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1) Potri.016G013900 [exp] 196 / 1e-54 AT5G60990 579 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.019G130900 [exp] 193 / 7e-53 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.013G158000 [exp] 193 / 8e-53 AT1G55150 322 / 3e-104 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] PF08147 [flax] [poplar] DBP10CT DBP10CT (NUC160) domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10028644 pacid=23164623 polypeptide=Lus10028644 locus=Lus10028644.g ID=Lus10028644.BGIv1.0 annot-version=v1.0 ATGAGAGAGCCGGTGGTGAGCTCCGCTACGGCGCTGGTGATCAACCAGAAGATCCAGAAGAAGGCAAAGTCAGGTGGGTTCGAGTCCCTGAACCTGAGCA GCGATGTATTCCGAGGAATCAAGCGGAAAGGTTACTGTGTCCCGACTCCGATCCAGCGCAAGACGATGCCGCTCATACTGTCCGGCACCGACGTCGTCGC CATGGCTCGTACCGGTTCGGGGAAGACCGCCGCGTTTCTCATCCCGATGCTGGAGAAGCTCAGGCAGCACGTGCCCCAGGGTGGTGTCAGGGCTCTGATT CTATCGCCGACCAGGGATTTGGCCATACAGACGCTCAAGTTCACCAAGGAGCTCGGGAGGTACACTGATCTTCGTACGAGTTTGTTGGTTGGTGGTGACA GCATGGAAACTCAGTTCGAGGAATTAGCACAGAACCCAGATGTCATAATCGCTACTCCTGGAAGGCTGATGCATCATTTGGATGAGATCGATGACATTTC ACTGAGGACTGTAGAGTATGTGGTGTTTGATGAGGCGGACAGTCTCTTCGGGATGGGTTTTGCAGAGCAGCTGCACAAGATTTTGATGCAGTTGAGTGAG AACCGGCAGACTTTACTGTTCAGCGCGACTATGCCAAGTGCGCTTGCCGAGTTTGCTAAAGCCGGACTGCGCGATCCTCAACTCGTTCGTCTTGATGTGG AAATGCACATTAGTCCAGATCTGCAGATGGAATTTTTCACCGTACGGCAGGAGGAAAAAGATGCAGCCTTGCTGTACCTAGTTAGGGAGCATATTAAGTC TGGCGAGCAGTCTTTGATATTTGTTTCCACAAAGTATCATGTCGAGTTCTTGAACACTCTATTTAGAGAAGAGGGTATAGAGCCTTCAGTTTGCTACGGT GACATGGACTCTGATGCTCGCCAGATTCACGTAGCAAGGTTCCGAGCACGAAAAACTATGCAGTTAATCGTGACTGATGTTGCAGCAAGGGGTATCGACA TTCCATTGCTTGACAACGTGATCAACTGGGACTTCCCTCCCAAACCAAAGCTTTTTGTACATCGTGTTGGTAGAGTTGCAAGGGCAGGCCGTACTGGGAC GGCATATTCTTTTGTAACGTCTGACGATATGTCTTACCTTCTAGATCTGCATCTGTTTCTTTCAAGACCAATCAGGGCTGCTCCCGCAGAAGCGGAGCTT GTTCAAGATATGGACAAAGTAATGAAAGAGGTTCATCAGGCAATTGCAAAGAGAGAGACTGTTTATGGACGCTTCCCGGAGACAATGATTGATCTAGTTT CAGACAGGATTTTACATATGGTTCATGCTTCTAAAGAGCTAACTGATCTGCAGAAAACACGACAGAATGCTTTCCGCTTGTATTGCAAGACCAAACCTGT ACCTTCAAAGGAGTCCATTAGAAGAGCAAAGGATTTACCACGGGGAGGAATACACCCGCTCTTCATAAATGTATTGGGCAGTGGCGAATTAATGGCAATG GCATTTTCTCAACGTTTGAAGGGGTTCAGACCTAAGCAGACAATCTTAGAGGCTGAAGGTGAAGCTGCCAAGTCAAAGAATATTAAGGGCGCAGCTTCTA AGTGGGTAGATGTGATGAAACAGAAAAGGGAAGTCCACGAGAAGATCATAAATTTGGTTCGACAGCAGAAGTCTGCTAAAGAGTTGGAAAAGGTTCAACA GCAGAAGTCTGCTCAACAGTTGGAAAAGGAAGACCCTATAGATATTGCTCCTCCCAAGAAAAACCAGAAAAAAGATCGCGGAACTAAAAGAAAGGCTGAG ACGTTCAAGGATGACGAGTTCTACATTAGTTCAGTACCAACAAATCAGCATACAGAGGCAGGTCTATCAGTAAATGGCAACGACGGTTTTGGATCTAACA GGTTGGATTCTGCCGTTCTTGATCTGGTTGGAGACGATAAAGATGGCTTAAAGAAGCGGAATCCCGGGCCTCATTGGGATCCGAAACGTAAAAAGTACAT CAAGTTAAATAACGGCGACCGTGTCACAGCCAGCGGGAAGGTGGTCAAAAACGAAAGCGGAGCAAGAACGAAGGGGTCGAAGACGGGGATATACAAGAAA TGGCAGGAGAAGTCCCATAGAAAGATCTCCTTCGGATCAAATGGCAACGGGAATGCAGATGAACCCAGCAGCAGCAGTAGCATCGCAGGGAACAACGATC AACGATGGAAGAACGGGAAGTACAGAGGAGGCCGGAACAACTCCAAGGCCGTCCCTAACTCAAACTTGCGTTCCGAAATCAAGGATCTTGACCAAGTCCG GAAAGAGCGCCAGAAGAAGGCGGATAGAATCACACATCTGAAGAGCAAAGGAGGTAAGAAGTTCGGGAAGAATGGGAGGCAGAAGGGCGGGAATAAGCCG GATAAGCAACACAGTGGGAAGCAGAAGGGTGGTGGGAAGAGGCCTGAAAGGCAAACCGGGAAGCGGGGTAGATTCTGA
AA sequence Show only first row Show all	>Lus10028644 pacid=23164623 polypeptide=Lus10028644 locus=Lus10028644.g ID=Lus10028644.BGIv1.0 annot-version=v1.0 MREPVVSSATALVINQKIQKKAKSGGFESLNLSSDVFRGIKRKGYCVPTPIQRKTMPLILSGTDVVAMARTGSGKTAAFLIPMLEKLRQHVPQGGVRALI LSPTRDLAIQTLKFTKELGRYTDLRTSLLVGGDSMETQFEELAQNPDVIIATPGRLMHHLDEIDDISLRTVEYVVFDEADSLFGMGFAEQLHKILMQLSE NRQTLLFSATMPSALAEFAKAGLRDPQLVRLDVEMHISPDLQMEFFTVRQEEKDAALLYLVREHIKSGEQSLIFVSTKYHVEFLNTLFREEGIEPSVCYG DMDSDARQIHVARFRARKTMQLIVTDVAARGIDIPLLDNVINWDFPPKPKLFVHRVGRVARAGRTGTAYSFVTSDDMSYLLDLHLFLSRPIRAAPAEAEL VQDMDKVMKEVHQAIAKRETVYGRFPETMIDLVSDRILHMVHASKELTDLQKTRQNAFRLYCKTKPVPSKESIRRAKDLPRGGIHPLFINVLGSGELMAM AFSQRLKGFRPKQTILEAEGEAAKSKNIKGAASKWVDVMKQKREVHEKIINLVRQQKSAKELEKVQQQKSAQQLEKEDPIDIAPPKKNQKKDRGTKRKAE TFKDDEFYISSVPTNQHTEAGLSVNGNDGFGSNRLDSAVLDLVGDDKDGLKKRNPGPHWDPKRKKYIKLNNGDRVTASGKVVKNESGARTKGSKTGIYKK WQEKSHRKISFGSNGNGNADEPSSSSSIAGNNDQRWKNGKYRGGRNNSKAVPNSNLRSEIKDLDQVRKERQKKADRITHLKSKGGKKFGKNGRQKGGNKP DKQHSGKQKGGGKRPERQTGKRGRF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77030			hydrolases, acting on acid anh...		Lus10028644 [exp]	0	1
AT3G09720			P-loop containing nucleoside t...		Lus10013644 [exp]	1.0	0.9682
AT5G35910			Polynucleotidyl transferase, r...		Lus10005691 [exp]	1.4	0.9650
AT3G25430			Polynucleotidyl transferase, r...		Lus10009563 [exp]	2.4	0.9578
AT5G57990		UBP23	ubiquitin-specific protease 23...		Lus10036607 [exp]	2.6	0.9491
AT2G40360			Transducin/WD40 repeat-like su...		Lus10023107 [exp]	3.2	0.9473
AT3G63400			Cyclophilin-like peptidyl-prol...		Lus10018746 [exp]	4.1	0.9410
AT5G25757			RNA polymerase I-associated fa...		Lus10037897 [exp]	4.2	0.9492
AT1G75330		OTC	ornithine carbamoyltransferase...		Lus10010641 [exp]	4.5	0.9537
AT5G50320		EAST1, AtELP3, ...	HISTONE ACETYLTRANSFERASE OF T...		Lus10014792 [exp]	4.8	0.9395
AT3G13460		ECT2	evolutionarily conserved C-ter...		Lus10002624 [exp]	5.0	0.9510

Compare expression of checked genes

Lus10028644 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.