Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21410 504 / 3e-180 SKP2A F-box/RNI-like superfamily protein (.1) AT1G77000 491 / 3e-175 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT5G23340 103 / 2e-24 RNI-like superfamily protein (.1) AT3G58530 100 / 2e-23 RNI-like superfamily protein (.1) AT4G15475 99 / 2e-22 F-box/RNI-like superfamily protein (.1) AT5G27920 86 / 4e-18 F-box family protein (.1) AT5G01720 78 / 1e-15 RNI-like superfamily protein (.1) AT2G25490 77 / 3e-15 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT1G47056 74 / 3e-14 VFB1 VIER F-box proteine 1 (.1) AT1G55590 71 / 3e-13 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018942 [exp] 681 / 0 AT1G21410 513 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10000776 [exp] 147 / 2e-43 AT1G77000 79 / 5e-18 ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) Lus10012764 [exp] 103 / 7e-24 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10013444 [exp] 99 / 6e-23 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10040998 [exp] 98 / 2e-22 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10029869 [exp] 92 / 3e-20 AT5G27920 441 / 5e-150 F-box family protein (.1) Lus10012294 [exp] 89 / 2e-19 AT3G58530 474 / 7e-169 RNI-like superfamily protein (.1) Lus10015980 [exp] 86 / 2e-18 AT3G58530 442 / 4e-156 RNI-like superfamily protein (.1) Lus10012214 [exp] 87 / 4e-18 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G185700 [exp] 560 / 0 AT1G77000 523 / 0.0 ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) Potri.002G074700 [exp] 535 / 0 AT1G21410 518 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.013G013100 [exp] 98 / 3e-22 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.005G088800 [exp] 94 / 5e-21 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.005G022600 [exp] 87 / 2e-18 AT5G27920 626 / 0.0 F-box family protein (.1) Potri.006G254100 [exp] 87 / 2e-18 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.016G128400 [exp] 86 / 6e-18 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G195800 [exp] 84 / 1e-17 AT3G58530 477 / 9e-170 RNI-like superfamily protein (.1) Potri.006G105400 [exp] 83 / 3e-17 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.007G075600 [exp] 74 / 8e-15 AT5G23340 291 / 5e-97 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028645 pacid=23164466 polypeptide=Lus10028645 locus=Lus10028645.g ID=Lus10028645.BGIv1.0 annot-version=v1.0 ATGGTGAGGAGTGAAGAATTGGATCGGTGCTTTGGAAAGCTGATGATGGTGGATGAAAAGGGTCAGAAGATTGGAGGAGTGGACATGGCTGAGTGGAAGG ATATTCCAATGGAGCTACTGTTGAGGATTTTGTCTGTTGTTGATGATCATCGGAGTATAATCATGGCGTCCGAGGTTTGTAGTGGATGGAGGGAGGCTGT TTGCTTGGGTCTTACTCATCTGTGTCTCTCTTGGTGCAAGAACAATATGAACAGCCTGGTTCTCTTTCTTGCTCCAAGGCTAAGGAACCTGCAAAGACTG TCCCTTCGGCAAGATAAACCGCAACTGGAGGACAATGCAGTGGAAACAATCGCTAGCCACTGCCGTGATCTGCAAGACTTGGACCTAAGCAAAAGCTTCA AGCTGACCGATCGCTCTCTGTACGCTCTAGCTCACGGCTGTCCTAACCTGGTCAAGCTCAACATCAGCGGCTGCACAGCGTTCAGCGATGATGGTCTTGA GTACCTCACTGGATTCTGCAGGAAGTTGAAGATTCTGAATCTCTGTGGATGTGTGAGTGCAGCTACTGATCACGCTTTGCAGGCCATAGGACGCAACTGC AGCGAATTGCAGTCGTTGAATCTCGGGTGGTGCGAGAACGTTGGTGACAATGGGGTATTGAGTCTGGCATATGGATGTCCCAAACTGCGAACACTCGACT TGTGTGGCTGTGTTTTGATAACAGACGATAGCGTGATTGCATTGGCCAACCGGTGTCCACACCTGACCTCCCTAGGTCTCTACTACTGCCGAAACATAAC TGACCGAGCAATATACTCGCTGGTTCACAGCCGAGTGAAGAACGACCTTGAAACTTACAGAAGGAAAGATGAAGAAGGGCTGAAGAGCTTGAACATCAGT CAATGTACGGCACTCACGCCGCCTGCTGTCCAGGCATTGTGCGACTCGTTCCCAGCTCTTCACACCTGTTCGGGGAGGCATTCATTGGTGATGAGTGGCT GTTTGAACTTGACTTCGGTGCACTGTGCCTGTGCGGTTCAGGCTCACCGCCTGCTGAGTTATGTTCCTCAGCATCACGCGCATTGA
AA sequence Show only first row Show all	>Lus10028645 pacid=23164466 polypeptide=Lus10028645 locus=Lus10028645.g ID=Lus10028645.BGIv1.0 annot-version=v1.0 MVRSEELDRCFGKLMMVDEKGQKIGGVDMAEWKDIPMELLLRILSVVDDHRSIIMASEVCSGWREAVCLGLTHLCLSWCKNNMNSLVLFLAPRLRNLQRL SLRQDKPQLEDNAVETIASHCRDLQDLDLSKSFKLTDRSLYALAHGCPNLVKLNISGCTAFSDDGLEYLTGFCRKLKILNLCGCVSAATDHALQAIGRNC SELQSLNLGWCENVGDNGVLSLAYGCPKLRTLDLCGCVLITDDSVIALANRCPHLTSLGLYYCRNITDRAIYSLVHSRVKNDLETYRRKDEEGLKSLNIS QCTALTPPAVQALCDSFPALHTCSGRHSLVMSGCLNLTSVHCACAVQAHRLLSYVPQHHAH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21410		SKP2A	F-box/RNI-like superfamily pro...		Lus10028645 [exp]	0	1
AT1G21410		SKP2A	F-box/RNI-like superfamily pro...		Lus10018942 [exp]	1.0	0.8650
AT2G18050		HIS1-3	histone H1-3 (.1.2)		Lus10025968 [exp]	2.4	0.8577
AT3G26085			CAAX amino terminal protease f...		Lus10006251 [exp]	3.2	0.8612
AT1G19800		ABCI14, TGD1	ATP-binding cassette I14, trig...		Lus10002636 [exp]	3.9	0.8494
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10030214 [exp]	4.0	0.8515
AT5G54470	CO		B-box type zinc finger family ...		Lus10039727 [exp]	4.9	0.8175
AT3G09085			Protein of unknown function (D...		Lus10021128 [exp]	7.9	0.8118
AT5G60460			Preprotein translocase Sec, Se...		Lus10036119 [exp]	8.9	0.7966
AT2G27800			Tetratricopeptide repeat (TPR)...		Lus10011029 [exp]	10.2	0.7966
AT1G63850			BTB/POZ domain-containing prot...		Lus10040458 [exp]	12.1	0.8248

Compare expression of checked genes

Lus10028645 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.