Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76990 700 / 0 ACR3 ACT domain repeat 3 (.1.2.3.4.5) AT1G69040 455 / 3e-158 ACR4 ACT domain repeat 4 (.1.2) AT5G25320 441 / 6e-152 ACT-like superfamily protein (.1) AT3G01990 433 / 8e-150 ACR6 ACT domain repeat 6 (.1) AT2G03730 414 / 4e-142 ACR5 ACT domain repeat 5 (.1.2) AT1G12420 381 / 2e-129 ACR8 ACT domain repeat 8 (.1) AT4G22780 370 / 6e-125 ACR7 ACT domain repeat 7 (.1) AT5G65890 350 / 2e-116 ACR1 ACT domain repeat 1 (.1.2) AT2G39570 57 / 2e-08 ACR9 ACT domain repeats 9, ACT domain-containing protein (.1) AT1G16880 41 / 0.001 ACR11 ACT domain repeats 11, uridylyltransferase-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018943 [exp] 904 / 0 AT1G76990 686 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10036827 [exp] 460 / 2e-160 AT1G69040 702 / 0.0 ACT domain repeat 4 (.1.2) Lus10003136 [exp] 448 / 2e-155 AT1G69040 520 / 0.0 ACT domain repeat 4 (.1.2) Lus10011329 [exp] 448 / 3e-155 AT1G69040 515 / 0.0 ACT domain repeat 4 (.1.2) Lus10011715 [exp] 410 / 4e-140 AT5G65890 520 / 0.0 ACT domain repeat 1 (.1.2) Lus10041543 [exp] 403 / 1e-137 AT3G01990 605 / 0.0 ACT domain repeat 6 (.1) Lus10012550 [exp] 401 / 6e-137 AT3G01990 612 / 0.0 ACT domain repeat 6 (.1) Lus10019191 [exp] 268 / 3e-87 AT1G69040 434 / 2e-152 ACT domain repeat 4 (.1.2) Lus10006662 [exp] 234 / 8e-73 AT4G22780 483 / 4e-170 ACT domain repeat 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G185600 [exp] 773 / 0 AT1G76990 709 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Potri.002G074800 [exp] 759 / 0 AT1G76990 676 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Potri.010G138600 [exp] 472 / 9e-165 AT1G69040 743 / 0.0 ACT domain repeat 4 (.1.2) Potri.T124144 [exp] 468 / 4e-163 AT1G69040 721 / 0.0 ACT domain repeat 4 (.1.2) Potri.008G109200 [exp] 466 / 3e-162 AT1G69040 723 / 0.0 ACT domain repeat 4 (.1.2) Potri.001G060100 [exp] 443 / 2e-153 AT1G69040 505 / 7e-178 ACT domain repeat 4 (.1.2) Potri.003G167800 [exp] 437 / 5e-151 AT1G69040 486 / 1e-170 ACT domain repeat 4 (.1.2) Potri.006G256500 [exp] 431 / 2e-148 AT5G25320 611 / 0.0 ACT-like superfamily protein (.1) Potri.001G327000 [exp] 427 / 3e-147 AT3G01990 630 / 0.0 ACT domain repeat 6 (.1) Potri.001G115600 [exp] 423 / 9e-146 AT1G12420 627 / 0.0 ACT domain repeat 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [flax] [poplar] ACT PF01842 [flax] [poplar] ACT ACT domain
Representative CDS sequence Show only first row Show all	>Lus10028646 pacid=23164590 polypeptide=Lus10028646 locus=Lus10028646.g ID=Lus10028646.BGIv1.0 annot-version=v1.0 ATGGCTAAGTTTTGCTGGCCGTATTTTGATCCTGAGTATGAGACGATGAGCGCCAGAATTAACCCTCCAAGGGTATCTGTGGACAACACTACATGTCAGG ATAGTACTCTCATAAAGGTAGATAGCATGAACAAGCCAGGGATTCTTCTTGAAGTAGTCCAAATTCTAACGGATCTTGACCTCATTATCTCCAAAGCTTA CATTTCGTCTGATGGTGGATGGTTCATGGATGTATTTCATGTTACTGACCAGCAAGGGAACAAGATTACGGATACCAGGACCATCGATTACATCGAAAAG GTGCTAGGACCGAAAAGTGGAGTAGCTAAAGAAGAAGGAACAGCTTGGCCCGGAAAAGGAGTCGGGGTGCACTCAATCGGCGATCACACAGCCATTGAAC TCATAGGCAGGGATCGTCCGGGCCTTTTATCTGAGATCTCAGCCATTCTTGCCAATCTTCACTTCAACGTGGCAGCTGCAGAAGTATGGACACATAACAG GAGGATAGCATGTGTTTTATATGTCAACGATGACACAACTTCTCGTGTTGTGGATGACCCCACCAGGCTATCAGCCATGGAAGAGCAGCTCAAGAATATC TTGCGTGGATGTGAGGATGATGAGGATAGAGCTGGTCGTACCAGCTTTGCTATGGGGTTTACGCATACTGACCGTAGGCTGCACCAGATGTTGTTTGCTG ATAGGGATTATGAAGGCAGTGAGGTCGAAAAGCCTGCCTCTTTCAAGCCACAGGTGGCCATCGAGCGTTGCGAGGAGAAGGGGTATTCAGTTGTCAGCGT TCGGAGCAAGGATCGTGCGAAGTTGCTGTATGATGTTGTTTGCACTCTGACTGATATGCAGTATGTTGTTTTCCATGCAACTATTTCGTCTGATGGCCCT TACGCTTCTCAGGAGTATTTCATCCGTCACATGGATGGCTGCACTCTTGACACTGAAGGAGAGAAGGAACGAGTCGTCAAATGCCTCGAAGCTGCAATCC GAAGAAGAGTATGTGAGGGTGTGAGCCTGGAGCTTAGTGCTAAAGACAGAGTGGGACTACTATCAGAAGTCACAAGGGTACTACGAGAAAATGGACTATC GGTATCTCGAGCAGGGGTGTCAACAATAGGAGAGCAGGCTATGAATGTGTTCTACGTTAGAGATGCTTCAGGTAACCCGGTCGACATGAAGACCATCGAA GCTCTACGCAAGGAGATCGGGCATAGGATGATGCTGAATGTAAAAAAATGTCCTGTTTCTGCTGCTTCTGCAGTTGGTAGAAAGGAACAACAAGAAGCCA ACAAAGGATGGGCAAAAACAAGCTTCTTCTTTGGTAACTTGTTTGACAAGTTTATGCCTTGA
AA sequence Show only first row Show all	>Lus10028646 pacid=23164590 polypeptide=Lus10028646 locus=Lus10028646.g ID=Lus10028646.BGIv1.0 annot-version=v1.0 MAKFCWPYFDPEYETMSARINPPRVSVDNTTCQDSTLIKVDSMNKPGILLEVVQILTDLDLIISKAYISSDGGWFMDVFHVTDQQGNKITDTRTIDYIEK VLGPKSGVAKEEGTAWPGKGVGVHSIGDHTAIELIGRDRPGLLSEISAILANLHFNVAAAEVWTHNRRIACVLYVNDDTTSRVVDDPTRLSAMEEQLKNI LRGCEDDEDRAGRTSFAMGFTHTDRRLHQMLFADRDYEGSEVEKPASFKPQVAIERCEEKGYSVVSVRSKDRAKLLYDVVCTLTDMQYVVFHATISSDGP YASQEYFIRHMDGCTLDTEGEKERVVKCLEAAIRRRVCEGVSLELSAKDRVGLLSEVTRVLRENGLSVSRAGVSTIGEQAMNVFYVRDASGNPVDMKTIE ALRKEIGHRMMLNVKKCPVSAASAVGRKEQQEANKGWAKTSFFFGNLFDKFMP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76990		ACR3	ACT domain repeat 3 (.1.2.3.4....		Lus10028646 [exp]	0	1
AT2G40840		DPE2	disproportionating enzyme 2 (....		Lus10031010 [exp]	4.5	0.8285
AT5G56850			unknown protein		Lus10032679 [exp]	6.0	0.8587
AT3G06880			Transducin/WD40 repeat-like su...		Lus10036201 [exp]	7.2	0.8299
AT5G57960			GTP-binding protein, HflX (.1)		Lus10024287 [exp]	13.6	0.8355
AT2G47240		CER8, LACS1	LONG-CHAIN ACYL-COA SYNTHASE 1...		Lus10002414 [exp]	16.7	0.8368
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10015118 [exp]	20.1	0.7959
AT2G01510			Tetratricopeptide repeat (TPR)...		Lus10042198 [exp]	21.9	0.7592
AT2G30390		FC2, FC-II, ATF...	ferrochelatase 2 (.1.2)		Lus10004292 [exp]	25.3	0.8257
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10011683 [exp]	25.7	0.7998
AT3G15030	TCP	TCP4, MEE35	maternal effect embryo arrest ...		Lus10000463 [exp]	29.9	0.7748

Compare expression of checked genes

Lus10028646 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.