Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43980 458 / 6e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 286 / 3e-88 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53360 278 / 2e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09950 260 / 1e-76 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02010 258 / 1e-76 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 256 / 9e-76 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33170 257 / 2e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G15130 245 / 4e-73 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G13230 248 / 6e-73 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 244 / 7e-72 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018945 [exp] 933 / 0 AT1G21400 644 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Lus10009269 [exp] 278 / 1e-85 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035164 [exp] 270 / 5e-81 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015898 [exp] 268 / 5e-81 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031994 [exp] 267 / 4e-80 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021232 [exp] 263 / 1e-79 AT2G33680 818 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019098 [exp] 267 / 4e-79 AT3G47840 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038741 [exp] 256 / 3e-77 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019891 [exp] 254 / 4e-77 AT1G56570 666 / 0.0 PENTATRICOPEPTIDE REPEAT PROTEIN FOR GERMINATION ON NaCl, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G185300 [exp] 605 / 0 AT1G43980 635 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G104700 [exp] 287 / 2e-88 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G021700 [exp] 283 / 5e-87 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G136200 [exp] 280 / 1e-85 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.003G164900 [exp] 269 / 7e-81 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G244500 [exp] 263 / 2e-79 AT3G15130 891 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 265 / 2e-78 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G184800 [exp] 262 / 6e-78 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G006800 [exp] 258 / 9e-78 AT2G33680 780 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 259 / 2e-77 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10028647 pacid=23164610 polypeptide=Lus10028647 locus=Lus10028647.g ID=Lus10028647.BGIv1.0 annot-version=v1.0 ATGCCCGAAAGAGATGTTGTTAGTTGGAATTCAGTGATTGTTGGGCATGCTTCGTGTGGCCTTGTCGATCAGGCGTTGGAAAAGTTCAGGCAGATGCAAG TTGTGGGAGTACAGCCAAGTGAGTATACATACTCAATCTTGATGTCGGTTGTGTCTATTGCAAATCATGTTAAGGAGCTTCATGGAAGCTCGATTCGACG TGGATTAAGTACTTCAAATGTGGTTGTTGGAAATTCACTGATTGACTTGTACGGGAACCTCGGCCTGCTAGATTATTCCTTACGTGTGTTCTTAAGCATG AGAGATACAGATGTTATATCGCGGAACTCGTTGATTACCTGCCTCTGTAAATCTGGATGTGGAGAATTACCCCTAAATTTGTTCTGCTTGATGAGATCTT CAGGGCATTTGGTTGATGCATTTACCTTATCTGTGATAATTAATTGCTGTTCTGATTTGAGGAATTTGAACAAGGGTAATCAGATTCTAGCACTTTGCAG GAAGTTGGGATTTCTATCCAACTCTCTCGTTTTGAGTGCAGCTATTCATATGCTTTCGAAATGCAACAGATTCGGGGATTCAGTTAAGCTCTTTGAAGAG CTACAGTTCCGGGATTCTGCAGTTTTGAGCACGATGATTTCGTGCCACACGTACCATCATTATACCGTAGAGGCTCTTCGACTATTCGTGCTTACCTTGA AGGAAGATGTAAGGCCAACGGAATACACATTCAGCAGTATACTAAGCAGCATCTACAGCTTCCCAGTTGAGCAAGGAACTCAAATCCACTCCTTAGTTCT CAAATCGGGATTCGAGTCGGATGCTGTTGTTGCTAGCTCATTGGTGGATATGTACTCCAAATATGGATTCGTTAACTATGCTATGGATATTTTTACTAGA ATGACTACCAGAGATTTGACATGTTGGAATACCTTGATCATGGGGCTAACTCACAGTAGGAAGTGTCGAGAAGCCGTTCGCACTTTCGAAGAACTACTAA GGATTGGTCCTGGTCCTGATAGGATCACTTTCTTCGCGGTTCTCTTAGCGTGCGCTAACGGAGGGTTTATCAACGAGGGAATGTCGATATACTCCTCGAA GATGCCTGATTACGGTATCATACCGGGGGATGAACACTTTGCTTGCTTAGTGAATCTATTGTGTCAAGCTGGTAGGGTTGATCAGGCAGTGGATGTTATA AAAGGAATGCCGTTTGAACCGGGTTCGTTAGTTTGGGATTCATTACTTCATGCTTGTTGTTCAAGTGGTGACTTGAATTTTTTAGAGGGACTTGCAGGCA GGCTCATGGATATTATTCAAGAACCGACTGTGCCGTATATGATCTTGGCTCGAATATACGAGATGCAGGGAAGATGGGAGTCGCTGCTCCGGCTGAAGAA CGTAATGAAATGTAGGATGAAGGTGAAGCAGGTTGTTGGTTTTAGTTGGATTGGTATCAGAAACAAGGTTTATGTTTTTGATAGTAACCAGTTACTACAA CATGGCAGCAAAGATATCTATTCTTCTCTAAGGCTACTGACTTGGGAGATGGAGGCGGAGCCCTTATGTCAGAACTGCAATATAGATCGTTAG
AA sequence Show only first row Show all	>Lus10028647 pacid=23164610 polypeptide=Lus10028647 locus=Lus10028647.g ID=Lus10028647.BGIv1.0 annot-version=v1.0 MPERDVVSWNSVIVGHASCGLVDQALEKFRQMQVVGVQPSEYTYSILMSVVSIANHVKELHGSSIRRGLSTSNVVVGNSLIDLYGNLGLLDYSLRVFLSM RDTDVISRNSLITCLCKSGCGELPLNLFCLMRSSGHLVDAFTLSVIINCCSDLRNLNKGNQILALCRKLGFLSNSLVLSAAIHMLSKCNRFGDSVKLFEE LQFRDSAVLSTMISCHTYHHYTVEALRLFVLTLKEDVRPTEYTFSSILSSIYSFPVEQGTQIHSLVLKSGFESDAVVASSLVDMYSKYGFVNYAMDIFTR MTTRDLTCWNTLIMGLTHSRKCREAVRTFEELLRIGPGPDRITFFAVLLACANGGFINEGMSIYSSKMPDYGIIPGDEHFACLVNLLCQAGRVDQAVDVI KGMPFEPGSLVWDSLLHACCSSGDLNFLEGLAGRLMDIIQEPTVPYMILARIYEMQGRWESLLRLKNVMKCRMKVKQVVGFSWIGIRNKVYVFDSNQLLQ HGSKDIYSSLRLLTWEMEAEPLCQNCNIDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G43980			Tetratricopeptide repeat (TPR)...		Lus10028647 [exp]	0	1
AT1G74630			Tetratricopeptide repeat (TPR)...		Lus10023592 [exp]	2.2	0.8766
AT2G15820		OTP51	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10020996 [exp]	4.2	0.8690
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10000091 [exp]	5.9	0.8501
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10019864 [exp]	9.2	0.8336
AT2G37310			Pentatricopeptide repeat (PPR)...		Lus10025273 [exp]	9.3	0.8689
AT1G59720		CRR28	CHLORORESPIRATORY REDUCTION28,...		Lus10037229 [exp]	10.2	0.8324
AT2G35540			DNAJ heat shock N-terminal dom...		Lus10027316 [exp]	11.7	0.8501
AT3G61360			Tetratricopeptide repeat (TPR)...		Lus10001784 [exp]	15.9	0.8130
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Lus10029481 [exp]	16.1	0.8362
AT2G40720			Tetratricopeptide repeat (TPR)...		Lus10027366 [exp]	19.1	0.8340

Compare expression of checked genes

Lus10028647 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.