Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21400 644 / 0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) AT5G09300 632 / 0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) AT5G34780 319 / 3e-104 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) AT1G59900 157 / 2e-42 AT-E1 ALPHA, AT-E1ALPHA pyruvate dehydrogenase complex E1 alpha subunit (.1) AT1G24180 157 / 2e-42 IAR4 IAA-CONJUGATE-RESISTANT 4, Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) AT1G01090 122 / 1e-29 PDH-E1 ALPHA, PDH-E1ALPHA pyruvate dehydrogenase E1 alpha (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018945 [exp] 892 / 0 AT1G21400 644 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Lus10020895 [exp] 615 / 0 AT5G09300 629 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Lus10033480 [exp] 532 / 0 AT5G09300 558 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Lus10000772 [exp] 525 / 0 AT1G21400 417 / 1e-145 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Lus10013295 [exp] 152 / 2e-40 AT1G59900 687 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10010728 [exp] 151 / 5e-40 AT1G59900 687 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10030820 [exp] 146 / 3e-39 AT1G59900 546 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10029216 [exp] 148 / 5e-39 AT1G59900 695 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10002678 [exp] 124 / 2e-30 AT1G01090 688 / 0.0 pyruvate dehydrogenase E1 alpha (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G185400 [exp] 663 / 0 AT5G09300 619 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Potri.002G074900 [exp] 620 / 0 AT1G21400 586 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Potri.005G064000 [exp] 618 / 0 AT5G09300 654 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Potri.010G038400 [exp] 159 / 4e-43 AT1G59900 651 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Potri.008G192500 [exp] 157 / 3e-42 AT1G59900 673 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Potri.002G179500 [exp] 120 / 3e-29 AT1G01090 672 / 0.0 pyruvate dehydrogenase E1 alpha (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF00676 [flax] [poplar] E1_dh Dehydrogenase E1 component
Representative CDS sequence Show only first row Show all	>Lus10028648 pacid=23164516 polypeptide=Lus10028648 locus=Lus10028648.g ID=Lus10028648.BGIv1.0 annot-version=v1.0 ATGGATGTTCAGGCTGTTGGGATTCGGGGCATTCGTGATGAGGTCTCCGAAGTCAACTTCTTGAGTACTGAAAGTGTCCTCGACAACACGATATCGTATA TTGTAACAGGGGTTCTCTTTCGAGTCGATCTCGGTCCAATTACTGACAAAATGATATTTCGTGCGTGCCCCATTGTGCTTGTTCATGGGTATCTTTCATT GCCAGGCGAAATCCTGATGAATGAGACTTTGGATATGATATTTGAGACCAATCTTACAAGTTGGACTTTAACAATCATTCGATTTGTTAAGGATCTTGCC AGCTCTAAGCATATCGCTTCTCCCACTTTTTTCCTCACTAAAATTCTTACAACACAAATGGGAATCTGGGTTGCCAGGAAATCCGGAGCCGCCGCCATGA CGGCGACGACGGCGGCGTCGAGTTATCACCTGAGGAGAATTGTTAACAGTAGCCATGGCGGTTCTTCTACCTGTTTGATTGCTGGGGAGAATTATGTGAA GAAGGGTTGGGATTTAGGTGGTTTGTGGAGAAGATTCAAGTCGTCGAAATCATCTGCCGCCGTTGATCAGCTTCATCCGGCGTATTCAAGCGACGATGAG GCTAACGGTAACGCTCAGGTACTGGATTTTCCAGGAGGACAAGTAACGTATATTCCGGAAATGAAGTTCATTTCCGAGTCGAACGACAAGAGGGTACCTT GTTACAGAGTTTTGGATGACAATGGTGCCCTCATCCGAGGAAGTGAATTCGAAGAGGTGAGCAAGGGAGTTGCTGTGAAGATGTACAGAGAAATGGTGAA GCTTCAAGTAATGGACACCATCTTCTACGAAGCGCAGCGACAAGGCCGGATATCCTTTTACCTTACCTCATCCGGTGAGGAAGCCATCAGCGTTGCTTCG GCTGCTGCACTCACCTCCGATGATGTCATCCTTCCCCAGTACCGGGAGCCTGGAGTTCTGCTATGGCGTGGCTTCACGCTTCAGGAATTCGCCAACCAAT GCTTCGGGAACAAGCACGACTACGGGAAAGGAAGACAAATGCCTATCCATTACGGATCTAACAAGCTCAATTACTTCACCGTTTCGTCCCCTATAGCCAC CCAGATCCCGCAGGCTGCTGGAGTAGCATACGCTCTCAAGATGGACAAGAAGGATGCTTGTGTAGCCACATTTTTCGGCGATGGTAGCACTAGCGAGGGA GATTTTCACGCTGGTTTGAACTTCGCGGCGGTCATGGAGTCCCCTGTTATATTCGTTTGTAGGAACAATGGATGGGCCATTAGTACCAAAGTGTCGGAAC AATTTCGAAGTGATGGGATTGTGGTCAAAGGACAAGGTTATGGGATAAGAAGCATTAGGGTTGATGGTAATGATGCTCTTGCCGTTTACTCAGCCATCCA TTCCGCTCGTCACATTGCGGTCAACGAAGGAAAACCGGTACTTGTCGAGTTTCTAACATACCGGGTAGGGCACCACTCCACCTCCGACGACTCGACCAAG TACAGGCCATTGGACGAGATCGAGTACTGGAAAGTGGCTAGGAACCCAGTGAACAGATTCCGAAAATGGGTCGAAACCAACGGATGGTGGAGTGACAATG AAGAATCTGAGCTCAGAGCCACAACTAGGAAACAACTCTTGCAAGCGATTCAGGCGGCGGAGAAGACCGAGAAGCCTTCTGTGAAAGAAATGTTCGCCGA CATTTATGATCGACCACCGTTGAATCTCTGCCAACAAGAAGAACAACTCAGAGAAAACATTAAGAAATACCCCATGGATTACCCTACTGATGTTCCTGCC TATACTAATTAA
AA sequence Show only first row Show all	>Lus10028648 pacid=23164516 polypeptide=Lus10028648 locus=Lus10028648.g ID=Lus10028648.BGIv1.0 annot-version=v1.0 MDVQAVGIRGIRDEVSEVNFLSTESVLDNTISYIVTGVLFRVDLGPITDKMIFRACPIVLVHGYLSLPGEILMNETLDMIFETNLTSWTLTIIRFVKDLA SSKHIASPTFFLTKILTTQMGIWVARKSGAAAMTATTAASSYHLRRIVNSSHGGSSTCLIAGENYVKKGWDLGGLWRRFKSSKSSAAVDQLHPAYSSDDE ANGNAQVLDFPGGQVTYIPEMKFISESNDKRVPCYRVLDDNGALIRGSEFEEVSKGVAVKMYREMVKLQVMDTIFYEAQRQGRISFYLTSSGEEAISVAS AAALTSDDVILPQYREPGVLLWRGFTLQEFANQCFGNKHDYGKGRQMPIHYGSNKLNYFTVSSPIATQIPQAAGVAYALKMDKKDACVATFFGDGSTSEG DFHAGLNFAAVMESPVIFVCRNNGWAISTKVSEQFRSDGIVVKGQGYGIRSIRVDGNDALAVYSAIHSARHIAVNEGKPVLVEFLTYRVGHHSTSDDSTK YRPLDEIEYWKVARNPVNRFRKWVETNGWWSDNEESELRATTRKQLLQAIQAAEKTEKPSVKEMFADIYDRPPLNLCQQEEQLRENIKKYPMDYPTDVPA YTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21400			Thiamin diphosphate-binding fo...		Lus10028648 [exp]	0	1
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10007727 [exp]	2.6	0.9546
AT1G63500			Protein kinase protein with te...		Lus10008530 [exp]	4.2	0.9347
AT4G32480			Protein of unknown function (D...		Lus10015437 [exp]	10.8	0.9415
AT5G51880			2-oxoglutarate (2OG) and Fe(II...		Lus10015015 [exp]	15.5	0.9302
AT2G37150			RING/U-box superfamily protein...		Lus10023507 [exp]	16.0	0.9398
AT5G13800		CRN1, PPH	Co-regulated with NYE1, pheoph...		Lus10019755 [exp]	16.9	0.9397
AT3G29270			RING/U-box superfamily protein...		Lus10005220 [exp]	17.9	0.9285
AT1G73980			Phosphoribulokinase / Uridine ...		Lus10009678 [exp]	20.0	0.9220
AT2G38410			ENTH/VHS/GAT family protein (....		Lus10025264 [exp]	22.7	0.9339
AT3G30390			Transmembrane amino acid trans...		Lus10036845 [exp]	24.2	0.9363

Compare expression of checked genes

Lus10028648 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.