Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21380 426 / 7e-142 Target of Myb protein 1 (.1) AT1G76970 395 / 2e-130 Target of Myb protein 1 (.1) AT4G32760 295 / 2e-89 ENTH/VHS/GAT family protein (.1.2) AT3G08790 266 / 3e-79 ENTH/VHS/GAT family protein (.1) AT2G38410 224 / 2e-63 ENTH/VHS/GAT family protein (.1) AT5G01760 198 / 6e-55 ENTH/VHS/GAT family protein (.1) AT5G63640 193 / 5e-54 ENTH/VHS/GAT family protein (.1) AT5G16880 116 / 9e-28 Target of Myb protein 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018948 [exp] 657 / 0 AT1G21380 439 / 1e-151 Target of Myb protein 1 (.1) Lus10029739 [exp] 456 / 4e-153 AT1G21380 518 / 0.0 Target of Myb protein 1 (.1) Lus10042770 [exp] 450 / 3e-151 AT1G21380 514 / 4e-180 Target of Myb protein 1 (.1) Lus10011267 [exp] 363 / 1e-120 ND 39 / 0.002 Lus10022140 [exp] 322 / 2e-99 AT4G32760 637 / 0.0 ENTH/VHS/GAT family protein (.1.2) Lus10025264 [exp] 257 / 4e-75 AT2G38410 406 / 1e-132 ENTH/VHS/GAT family protein (.1) Lus10014155 [exp] 255 / 9e-75 AT5G01760 439 / 5e-146 ENTH/VHS/GAT family protein (.1) Lus10022753 [exp] 253 / 6e-74 AT5G01760 434 / 3e-144 ENTH/VHS/GAT family protein (.1) Lus10028722 [exp] 209 / 3e-59 AT2G42730 76 / 1e-14 F-box family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G184900 [exp] 471 / 3e-159 AT1G21380 473 / 2e-163 Target of Myb protein 1 (.1) Potri.002G075500 [exp] 460 / 5e-155 AT1G21380 471 / 2e-162 Target of Myb protein 1 (.1) Potri.018G039100 [exp] 326 / 3e-101 AT4G32760 561 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.006G241000 [exp] 322 / 7e-100 AT4G32760 630 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.016G131900 [exp] 268 / 3e-79 AT2G38410 406 / 2e-132 ENTH/VHS/GAT family protein (.1) Potri.006G106500 [exp] 259 / 3e-76 AT2G38410 407 / 2e-133 ENTH/VHS/GAT family protein (.1) Potri.T010700 [exp] 193 / 2e-54 AT5G63640 449 / 1e-156 ENTH/VHS/GAT family protein (.1) Potri.T005401 [exp] 193 / 2e-54 AT5G63640 449 / 1e-156 ENTH/VHS/GAT family protein (.1) Potri.004G138600 [exp] 179 / 2e-49 AT5G63640 447 / 1e-155 ENTH/VHS/GAT family protein (.1) Potri.019G050000 [exp] 122 / 9e-30 AT5G16880 573 / 0.0 Target of Myb protein 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03127 [flax] [poplar] GAT GAT domain CL0009 [flax] [poplar] ENTH_VHS PF00790 [flax] [poplar] VHS VHS domain
Representative CDS sequence Show only first row Show all	>Lus10028649 pacid=23164482 polypeptide=Lus10028649 locus=Lus10028649.g ID=Lus10028649.BGIv1.0 annot-version=v1.0 ATGGGGAAGGAAGGAGCTGAGACAGTGGCAACAATGGCGCCTTTCGACTCTGTTTCTACATCAGCAGGGATATCGATAGATGGATCAAGTTTGCAATTTC AAAGAGGGTGGAGTCTCTTCATCTGGCCCAATTGCCCCCTGCTTGAAGAGTTAGCTGTGAAATGGTCGAGACGCCTAACAAGGCTAAAGGTTGTGGGTTC TTCATTGAAGCACTTGGAAGTAATAGATTGCCTACCTTTGGAATCGGTGGAGATTGATCATGCCCCTCGCCTCGAGCGGTTGATACTTGATGATAGTTCC TACCATGTGGAGGAAATCCAAGTGGGTAATTTCCCATCGCTTGTGGATATGAGCTTAGGCCACAATTTCAATGGTATGTTTAGAGCACTTTCAGGATGCG CTAGTCGATTGGTGTCCCTCTCGTTGATGTCGTCCGGATACTGGAGGGCGATTTCGGATGCAGCTGAACAGGGCAACCTGGAGCGGCTAACGGTGCTGGT TTCAGCAGGCAATCATCGTAGCATCCTTGGGTTGATTCCTTTGATAAATTTGTGTCCCCGTTTGCACACGCTGCGATTGCTTCTGCGTACGCATTATTGC ACTGCGGAACCTGATCGGCAGAGTGTGGATGTGGTTAAATTACAGCGGGAGAGCATCAAAGTAGTGGAGGTGATCGGGTTTCGCGGTTATGAGTTGGAGT ACGAGTTTATGGAGTATGTAATGGAATATTTTGTGGGGCTAGAAAGAATAGTGATCGACTGGTCCACTACTTCCTTCTTTTATGAAAATAGAAGTATTCC TCATGAGGTTCGATTTCGTGGCTGCAGCAAGCGAGGCCGCCGCAAAATCAAAAAGCTTATATTGGAGCTGAAATCACGAGCAGCCCCAACAGTTGAATTC ACTTTCAAAAGAGTTCTGAATTTTGGGGGTGGACTGCTGATCGTCTTGGTTGAACTTTTTGTAGTTGCAGGGTCAAGTATGGCTAACGATGCGGCAGCAT GTGCGGACAGGGCGACGAGTGATCTGCTAATTGGTCCCGATTGGGCGATTAACATTGAGTTGTGTGATATCATCAATTTGGATCCTAGGCAAGCAAAAGA CGCATTGAAAGTACTGAAAAAGCGGCTAGGGAACAAGAATTCAAAGACACAACTCCTAGCTCTGTATGCATTGGAGACTGTCAGCAAAAATTGCGGAGAG AATGTGTTTCAGCAGATTGTAGAGCGTGATATCTTGCGCGATATGGTTAAAATCGTGAAGAAGAAGCCGGATCTGACTGTCAGAGAAAAGATACTTAGCC TCATAGACACGTGGCAGGAGGCATTCGGCGGGGCAGGGGGGAGGTACCCTCAGTATTATGCTGCTTATAATGAACTCAGGGCTGCTGGATTCGAATTCCC ACCCAGGGCAGATAGCGGCGTGGCAATATTCACTCCTCCCCAAACACAGCCAATAGTGCATGAACCAACGTATGAAGATGCTGCAATTCAGGCATCTCTC GAGTCTGATGCTTCCGGCCTCAGCTTATTGGAGATTGAAAATGCGCGTGGTCTAGCAGAGGTGCTAATGGAAATGCTCGGTGCCTTGGATCCTAAGAAAC CTGAGGGTTTGAATGAAGAGGTGATTGTAGACCTTGTTGATCAATGCCGTTCATATCAAACAAGGGTTAGGCTTCTTGTGAATGAGACGACAGATGAGGA ACTTCTAGCACAAGGATTATCCCTCAACGATACCTTGCAGCGTGTCATTCGTCGCCATGATGACATTGCTAATGGAACTGCTGCTGCTCAAGTGGTAGAG ACGCAACGAGAGACTCCACTCGTGCCGCTTGCTAATGTTAACCATGCGGAGGATGATGATGAATCAGATGATGATCTCTCCCAGCTGGCTCGTAGATCGT CGAGGGAACCCTCCTCACAAGCTCAAGGCCGGAAACCAGCCAGCGTCAGGACTCCGCCACCTTCATCAAAGAAGCCGGTGATCGACTCAGACACGGCAGA CTACCTCAGCGGCGACTCATACATGTCCACCGACAGAGATTACCCCCTCCACACGTCAGAACCAACACCCCGATCGGACCCACATTACTCCCCGCTCGAG TCGCCCACATCATCTCCACCGCGGCCACCACCACTGCCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCCAGGCATAA
AA sequence Show only first row Show all	>Lus10028649 pacid=23164482 polypeptide=Lus10028649 locus=Lus10028649.g ID=Lus10028649.BGIv1.0 annot-version=v1.0 MGKEGAETVATMAPFDSVSTSAGISIDGSSLQFQRGWSLFIWPNCPLLEELAVKWSRRLTRLKVVGSSLKHLEVIDCLPLESVEIDHAPRLERLILDDSS YHVEEIQVGNFPSLVDMSLGHNFNGMFRALSGCASRLVSLSLMSSGYWRAISDAAEQGNLERLTVLVSAGNHRSILGLIPLINLCPRLHTLRLLLRTHYC TAEPDRQSVDVVKLQRESIKVVEVIGFRGYELEYEFMEYVMEYFVGLERIVIDWSTTSFFYENRSIPHEVRFRGCSKRGRRKIKKLILELKSRAAPTVEF TFKRVLNFGGGLLIVLVELFVVAGSSMANDAAACADRATSDLLIGPDWAINIELCDIINLDPRQAKDALKVLKKRLGNKNSKTQLLALYALETVSKNCGE NVFQQIVERDILRDMVKIVKKKPDLTVREKILSLIDTWQEAFGGAGGRYPQYYAAYNELRAAGFEFPPRADSGVAIFTPPQTQPIVHEPTYEDAAIQASL ESDASGLSLLEIENARGLAEVLMEMLGALDPKKPEGLNEEVIVDLVDQCRSYQTRVRLLVNETTDEELLAQGLSLNDTLQRVIRRHDDIANGTAAAQVVE TQRETPLVPLANVNHAEDDDESDDDLSQLARRSSREPSSQAQGRKPASVRTPPPSSKKPVIDSDTADYLSGDSYMSTDRDYPLHTSEPTPRSDPHYSPLE SPTSSPPRPPPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21380			Target of Myb protein 1 (.1)		Lus10028649 [exp]	0	1
AT2G33700			Protein phosphatase 2C family ...		Lus10013213 [exp]	1.4	0.8665
AT5G01830			ARM repeat superfamily protein...		Lus10025244 [exp]	3.5	0.8660
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Lus10028820 [exp]	3.5	0.8597
AT3G49800			BSD domain-containing protein ...		Lus10011556 [exp]	3.9	0.8615
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Lus10028713 [exp]	4.6	0.8442
AT1G43130		LCV2	like COV 2 (.1)		Lus10028563 [exp]	6.3	0.8328
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10028127 [exp]	10.1	0.7941
					Lus10038116 [exp]	11.0	0.7977
AT4G26470			Calcium-binding EF-hand family...		Lus10008357 [exp]	11.8	0.8273
AT5G11520		YLS4, ASP3	YELLOW-LEAF-SPECIFIC GENE 4, a...		Lus10022137 [exp]	12.5	0.8250

Compare expression of checked genes

Lus10028649 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.