Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29470 1018 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G34300 998 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G64030 956 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G51070 880 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G40280 617 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G56080 585 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G19430 548 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 514 / 2e-173 Putative methyltransferase family protein (.1) AT2G39750 498 / 5e-167 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G77260 496 / 1e-166 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018954 [exp] 1493 / 0 AT1G29470 1047 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10042767 [exp] 1228 / 0 AT1G29470 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10029736 [exp] 1202 / 0 AT1G29470 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10020894 [exp] 939 / 0 AT5G64030 1019 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10019644 [exp] 860 / 0 AT5G64030 922 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028354 [exp] 836 / 0 AT3G51070 1051 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10033481 [exp] 831 / 0 AT5G64030 924 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10014274 [exp] 824 / 0 AT3G51070 1041 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041804 [exp] 823 / 0 AT3G51070 1034 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G184500 [exp] 1122 / 0 AT1G29470 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G075800 [exp] 1104 / 0 AT1G29470 1048 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.007G104000 [exp] 969 / 0 AT5G64030 1022 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G065200 [exp] 954 / 0 AT5G64030 1078 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G118100 [exp] 885 / 0 AT3G51070 990 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G017400 [exp] 870 / 0 AT3G51070 960 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G185000 [exp] 620 / 0 AT2G40280 810 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G260600 [exp] 560 / 0 AT1G19430 953 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G059500 [exp] 503 / 3e-169 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G077100 [exp] 494 / 6e-166 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10028650 pacid=23164542 polypeptide=Lus10028650 locus=Lus10028650.g ID=Lus10028650.BGIv1.0 annot-version=v1.0 ATGGCGACAGGGAAGTATTCACGAGTCGATGGCAGGAAGTCGTCGAACTATTGCTCGACGATCAGCGTGGTTGCGTTCGTTGCGTTGTGTTTAGTCGGGA TTTGGATGTTCATGTCATCGACTGATGTCAACCCTGAACCGGTTGTGGATGTGCCATCTTCTCAGGAGACTGCTAGTCATGGTAAACAAAGCATTGCTGA GAGTGGTGATTTACCAGAGGGTGCAAGCAAAGAGGTCGAGAACAACACCGAAGACAATTCGAATGGCGATAGCCAGCCGGATGTCCAGGACGAAAGCAAG GTGAAAGAGACTGAGACTGTGTCTAATCAAGGTGCAAAGACCGAGGAGCCTCGGGAGGAGCCAAATGACGATGGGGCAAAGGAGGATGGAAATGATGAAA AGATTGAGCAGACTGGATCGGAGGATAGTTCAAGTGAGAAATCGAAGTCACACGAAGGGGAGGACAAGTCCACAGATGATTCGAATCAGGATAAGAACAG TAGCGAGAGCGAGACTGAGGGTAGTTCCGATGAGGGAGATAGTAAGCCTACAGAAGAAGGTGCAAATGATAATGATAATCAAGGTAAAGATAAGGCAGCT GAGGTTTTCCCTGCTGGTGCGCAGTCAGAGCTTCTCAACGAGACGAATACACAGAATGGGGCTTTTTCGACTCAAGTTGCTGAGTCTCAGAAGGAGAAGA AAGTTCAAGAATCGTCGGAGGATGCTAAACAAGACGATGCTCAAGCATGGAAACTATGCAACACTACTGCCGGTCCGGATTACATTCCTTGCCTTGACAA TTGGCAAGCGATCAGGAAGCTTCCGAGCACTAAGCATTACGAACATCGGGAGAGGCATTGCCCTGACGTAGCACCTACGTGCGTTGTTCCCATGCCTGAA GGATATAAGAAATCCATCAAGTGGCCTAACAGCAGGGATAAGATCTGGTATTACAATGTTCCCCATACCAAGCTCGCCGAGATCAAAGGACATCAGAACT GGGTGAAAGTAACTGGCGAATATCTTACGTTTCCAGGTGGTGGGACTCAGTTCAAGCATGGTGCCCTTCATTACATCGATTTCATCCAGGAATCCCTTGC AGACATTGCTTGGGGGAAAAGGAGCCGTGTGATATTGGATGGTGGATGTGGTGTGGCCAGCTTTGGTGGTTATCTTTTCGATCGGGATGTTCTTGCTATG TCGTTTGCTCCCAAGGACGAGCATGAAGCTCAGGTTCAATTCGCGCTAGAGCGTGGTATTCCCGCCACATTGGCTGTTATGGGCACCAAGAGGCTGCCTT TCCCGGGTTACGTCTTTGATCTGGTGCACTGTGCACGTTGCAGGGTTCCTTGGCATATCGAAGGCGGTAAGCTTCTTTTGGAGCTGAATCGTGTGTTGCG ACCTGGTGGCTACTTTGTGTGGTCTGCCACTCCTGTTTATCAAAAGTTGCAAGAGGACGTCGAGATCTGGGAAGAGATGTCCAAGTTGACAAAGGCGATG TGCTGGGAGCTTGTCGTGATCAAGAAAGACGCTTTGAACAGCGTTGGTGCTGCAATATACAGAAAGCCGTCTTCCAACGAGTGCTACAATCAAAGAACCA CGAGCGAGCCACCATTGTGCAAAGAATCCGACGATCCAAATGCAGCTTGGAATGTGCCGCTTGAGGCCTGTATGCATAGAGTGCCCGAGGACGAATCTGT CCGTGGATCCAAGTGGCCCGAGCAGTGGCCGCAGAGGTTGGAGAGTCCGCCGTACTGGCTGAAATCACAGGTCGGAGTTTACGGTAAAGCTGGTCAGGAC GACTTTGTTGCTGACTACAACCACTGGAAGAACGTCGTCTCGCAATCGTACCTTGATGGAATGGGTATCAACTGGGGCTCTGTAAGGAATGTAATGGACA TGAGAGCTGTCTATGGAGGGTTCGCGGCTGCATTGAAGGACGTGCAAGTTTGGGTAATGAACGTAGTCCCGATCGATTCTCCCGACACTCTCCCAATAAT CTACGAGCGTGGTTTGTTCGGAATGTACCACGACTGGTGCCAGTCGTTCAACACCTACCCTAGAACCTACGATGTCCTTCATGCGGATCATCTCCTCTCC ATCGTTAAAAAGCGGTGCAGCCTAGTGGGAGTGATTGCCGAGGTCGACAGGATTCTGAGGCCGGAAGGGAAGCTGATTTTGCGAGACAACGTGGAAACGA TAACCGAGGTCGAGAAATTGGCGAAATCACTGCACTGGAATGTACGGATGATCTTCTCGAAGGAAGGCGAAGGATTGGCGTGCATCGAGAAGACGGTGTG GCGTCCGACCGAGGTTCAGTTGGTGGCCTCGGCGATCATGTGA
AA sequence Show only first row Show all	>Lus10028650 pacid=23164542 polypeptide=Lus10028650 locus=Lus10028650.g ID=Lus10028650.BGIv1.0 annot-version=v1.0 MATGKYSRVDGRKSSNYCSTISVVAFVALCLVGIWMFMSSTDVNPEPVVDVPSSQETASHGKQSIAESGDLPEGASKEVENNTEDNSNGDSQPDVQDESK VKETETVSNQGAKTEEPREEPNDDGAKEDGNDEKIEQTGSEDSSSEKSKSHEGEDKSTDDSNQDKNSSESETEGSSDEGDSKPTEEGANDNDNQGKDKAA EVFPAGAQSELLNETNTQNGAFSTQVAESQKEKKVQESSEDAKQDDAQAWKLCNTTAGPDYIPCLDNWQAIRKLPSTKHYEHRERHCPDVAPTCVVPMPE GYKKSIKWPNSRDKIWYYNVPHTKLAEIKGHQNWVKVTGEYLTFPGGGTQFKHGALHYIDFIQESLADIAWGKRSRVILDGGCGVASFGGYLFDRDVLAM SFAPKDEHEAQVQFALERGIPATLAVMGTKRLPFPGYVFDLVHCARCRVPWHIEGGKLLLELNRVLRPGGYFVWSATPVYQKLQEDVEIWEEMSKLTKAM CWELVVIKKDALNSVGAAIYRKPSSNECYNQRTTSEPPLCKESDDPNAAWNVPLEACMHRVPEDESVRGSKWPEQWPQRLESPPYWLKSQVGVYGKAGQD DFVADYNHWKNVVSQSYLDGMGINWGSVRNVMDMRAVYGGFAAALKDVQVWVMNVVPIDSPDTLPIIYERGLFGMYHDWCQSFNTYPRTYDVLHADHLLS IVKKRCSLVGVIAEVDRILRPEGKLILRDNVETITEVEKLAKSLHWNVRMIFSKEGEGLACIEKTVWRPTEVQLVASAIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10028650 [exp]	0	1
AT1G24030			Protein kinase superfamily pro...		Lus10029187 [exp]	9.7	0.8821
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10029232 [exp]	10.2	0.8360
AT5G17600			RING/U-box superfamily protein...		Lus10013618 [exp]	12.2	0.8424
AT3G19460			Reticulon family protein (.1.2...		Lus10027867 [exp]	19.8	0.8584
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10001195 [exp]	23.2	0.7963
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10037672 [exp]	25.3	0.7964
AT4G38580		HIPP26, ATFP6	HEAVY METAL ASSOCIATED ISOPREN...		Lus10028426 [exp]	32.5	0.8373
AT2G28250		NCRK	Protein kinase superfamily pro...		Lus10021460 [exp]	42.4	0.7816
AT1G44350		ILL6	IAA-leucine resistant (ILR)-li...		Lus10025668 [exp]	43.2	0.7876
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10012162 [exp]	43.2	0.8340

Compare expression of checked genes

Lus10028650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.